Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GALC-206ENST00000544807 2528 ntTSL 2 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 MIR645-201ENST00000385283 94 ntBASIC14□□□□□ -0.17
TRIM39Q9HCM9 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 MAGEA5-201ENST00000446757 942 ntBASIC14□□□□□ -0.17
TRIM39Q9HCM9 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 AL133467.4-201ENST00000602953 725 ntBASIC14□□□□□ -0.17
TRIM39Q9HCM9 AL021707.6-201ENST00000609212 491 ntBASIC14□□□□□ -0.17
TRIM39Q9HCM9 AC007718.1-201ENST00000621078 280 ntBASIC14□□□□□ -0.17
TRIM39Q9HCM9 AC015967.2-201ENST00000624092 234 ntBASIC14□□□□□ -0.17
TRIM39Q9HCM9 AC006435.4-201ENST00000625037 234 ntBASIC14□□□□□ -0.17
TRIM39Q9HCM9 AL356737.1-201ENST00000634391 234 ntBASIC14□□□□□ -0.17
TRIM39Q9HCM9 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 DUT-208ENST00000559540 1441 ntTSL 2 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 EEF1DP6-201ENST00000449232 372 ntBASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 FTH1P22-201ENST00000456305 520 ntBASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRIM39Q9HCM9 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms