Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM47Q96LD4 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
TRIM47Q96LD4 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM47Q96LD4 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM47Q96LD4 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM47Q96LD4 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 AC139712.1-201ENST00000378256 1875 ntBASIC16.44■□□□□ 0.22
TRIM47Q96LD4 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 SAT1-201ENST00000379251 801 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 SAT1-202ENST00000379253 909 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 SAT1-203ENST00000379254 868 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 KRT18P46-201ENST00000435568 1279 ntBASIC16.44■□□□□ 0.22
TRIM47Q96LD4 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 AC098934.1-203ENST00000442868 1262 ntBASIC16.44■□□□□ 0.22
TRIM47Q96LD4 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 AC026470.1-201ENST00000478038 846 ntBASIC16.44■□□□□ 0.22
TRIM47Q96LD4 CISD2-202ENST00000503643 808 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 GOLGA2P7-209ENST00000560408 745 ntBASIC16.44■□□□□ 0.22
TRIM47Q96LD4 USB1-205ENST00000561743 1135 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 AL627230.2-201ENST00000613254 655 ntBASIC16.44■□□□□ 0.22
TRIM47Q96LD4 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM47Q96LD4 AC012617.1-204ENST00000586340 2305 ntBASIC16.44■□□□□ 0.22
TRIM47Q96LD4 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 AC004554.1-201ENST00000422830 1468 ntBASIC16.43■□□□□ 0.22
TRIM47Q96LD4 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 GAS5-209ENST00000430245 723 ntTSL 3 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 SCARNA12-201ENST00000459155 270 ntBASIC16.43■□□□□ 0.22
TRIM47Q96LD4 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 CYP4F36P-201ENST00000589193 186 ntBASIC16.43■□□□□ 0.22
TRIM47Q96LD4 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 CICP4-201ENST00000447359 2812 ntBASIC16.43■□□□□ 0.22
TRIM47Q96LD4 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
TRIM47Q96LD4 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms