Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 MIR632-201ENST00000385193 94 ntBASIC15.15■□□□□ 0.02
LRCH3Q96II8 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 AL357833.2-202ENST00000413757 372 ntTSL 3 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 AC079325.1-201ENST00000430386 857 ntBASIC15.15■□□□□ 0.02
LRCH3Q96II8 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 GRAMD4P6-201ENST00000556999 244 ntBASIC15.15■□□□□ 0.02
LRCH3Q96II8 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 AC005954.1-201ENST00000591962 337 ntTSL 3 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 AC005972.3-201ENST00000606304 481 ntBASIC15.15■□□□□ 0.02
LRCH3Q96II8 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 AC126365.1-201ENST00000578585 1514 ntBASIC15.15■□□□□ 0.02
LRCH3Q96II8 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AL390755.1-201ENST00000623716 2027 ntBASIC15.14■□□□□ 0.01
LRCH3Q96II8 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AC097474.1-201ENST00000506481 1371 ntBASIC15.14■□□□□ 0.01
LRCH3Q96II8 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 FGD5P1-202ENST00000614866 2498 ntBASIC15.14■□□□□ 0.01
LRCH3Q96II8 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AC006987.1-201ENST00000413610 527 ntBASIC15.14■□□□□ 0.01
LRCH3Q96II8 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 CRIP1P2-201ENST00000425396 228 ntBASIC15.14■□□□□ 0.01
LRCH3Q96II8 AC010978.1-202ENST00000427050 893 ntTSL 3 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 YY1P2-201ENST00000438766 948 ntBASIC15.14■□□□□ 0.01
LRCH3Q96II8 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 DUX4L31-201ENST00000446466 1136 ntBASIC15.14■□□□□ 0.01
LRCH3Q96II8 AC099542.2-201ENST00000474149 553 ntTSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 GYG1-209ENST00000483267 801 ntTSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 OR52V1P-201ENST00000515557 898 ntBASIC15.14■□□□□ 0.01
LRCH3Q96II8 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LRCH3Q96II8 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 SKA2-205ENST00000580541 689 ntTSL 3 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AC090950.1-202ENST00000605733 644 ntBASIC15.14■□□□□ 0.01
LRCH3Q96II8 AC113385.2-201ENST00000614465 762 ntBASIC15.14■□□□□ 0.01
LRCH3Q96II8 HPX-213ENST00000615166 826 ntTSL 5 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC15.14■□□□□ 0.01
LRCH3Q96II8 AC138627.1-201ENST00000641127 1257 ntBASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms