Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 AC118758.2-201ENST00000614242 2813 ntBASIC13.58□□□□□ -0.24
PCDH1Q08174 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 HNRNPA1P41-201ENST00000397777 928 ntBASIC13.58□□□□□ -0.24
PCDH1Q08174 PPP1R2P4-201ENST00000424051 595 ntBASIC13.58□□□□□ -0.24
PCDH1Q08174 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC13.58□□□□□ -0.24
PCDH1Q08174 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.58□□□□□ -0.24
PCDH1Q08174 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC13.58□□□□□ -0.24
PCDH1Q08174 OARD1-212ENST00000482515 832 ntTSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 AC092658.1-201ENST00000505836 891 ntBASIC13.58□□□□□ -0.24
PCDH1Q08174 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC13.58□□□□□ -0.24
PCDH1Q08174 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC13.58□□□□□ -0.24
PCDH1Q08174 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 NDUFB10P1-201ENST00000567319 521 ntBASIC13.58□□□□□ -0.24
PCDH1Q08174 ELP5-212ENST00000574255 671 ntTSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC13.58□□□□□ -0.24
PCDH1Q08174 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.58□□□□□ -0.24
PCDH1Q08174 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC13.58□□□□□ -0.24
PCDH1Q08174 MIR6799-201ENST00000620297 69 ntBASIC13.58□□□□□ -0.24
PCDH1Q08174 AC015967.2-201ENST00000624092 234 ntBASIC13.58□□□□□ -0.24
PCDH1Q08174 AC006435.4-201ENST00000625037 234 ntBASIC13.58□□□□□ -0.24
PCDH1Q08174 AL356737.1-201ENST00000634391 234 ntBASIC13.58□□□□□ -0.24
PCDH1Q08174 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC13.58□□□□□ -0.24
PCDH1Q08174 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
PCDH1Q08174 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCDH1Q08174 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
PCDH1Q08174 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC13.58□□□□□ -0.24
PCDH1Q08174 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC13.57□□□□□ -0.24
PCDH1Q08174 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC13.57□□□□□ -0.24
PCDH1Q08174 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
PCDH1Q08174 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC13.57□□□□□ -0.24
PCDH1Q08174 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
PCDH1Q08174 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC13.57□□□□□ -0.24
PCDH1Q08174 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
PCDH1Q08174 CRCP-204ENST00000398684 492 ntTSL 2 BASIC13.57□□□□□ -0.24
PCDH1Q08174 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC13.57□□□□□ -0.24
PCDH1Q08174 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC13.57□□□□□ -0.24
PCDH1Q08174 SLC16A6P1-201ENST00000413214 1059 ntBASIC13.57□□□□□ -0.24
PCDH1Q08174 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.57□□□□□ -0.24
PCDH1Q08174 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.57□□□□□ -0.24
PCDH1Q08174 ZNF767P-206ENST00000513792 565 ntBASIC13.57□□□□□ -0.24
PCDH1Q08174 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC13.57□□□□□ -0.24
PCDH1Q08174 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
PCDH1Q08174 AL118558.3-201ENST00000607414 1079 ntBASIC13.57□□□□□ -0.24
PCDH1Q08174 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 MIR6869-201ENST00000619434 62 ntBASIC13.57□□□□□ -0.24
PCDH1Q08174 NAP1L6-202ENST00000641404 1222 ntBASIC13.57□□□□□ -0.24
PCDH1Q08174 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC13.57□□□□□ -0.24
PCDH1Q08174 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC13.57□□□□□ -0.24
PCDH1Q08174 STK3-218ENST00000617590 2485 ntTSL 5 BASIC13.57□□□□□ -0.24
PCDH1Q08174 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC13.57□□□□□ -0.24
PCDH1Q08174 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
PCDH1Q08174 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC13.57□□□□□ -0.24
PCDH1Q08174 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC13.57□□□□□ -0.24
PCDH1Q08174 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms