Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
USP39Q53GS9 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.32□□□□□ -0.12
USP39Q53GS9 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.32□□□□□ -0.12
USP39Q53GS9 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.32□□□□□ -0.12
USP39Q53GS9 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.32□□□□□ -0.12
USP39Q53GS9 LAP3P2-201ENST00000454686 1454 ntBASIC14.32□□□□□ -0.12
USP39Q53GS9 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
USP39Q53GS9 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
USP39Q53GS9 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.32□□□□□ -0.12
USP39Q53GS9 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
USP39Q53GS9 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
USP39Q53GS9 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.32□□□□□ -0.12
USP39Q53GS9 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC14.32□□□□□ -0.12
USP39Q53GS9 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 AC006987.1-201ENST00000413610 527 ntBASIC14.32□□□□□ -0.12
USP39Q53GS9 AQP7P5-201ENST00000428759 1049 ntBASIC14.32□□□□□ -0.12
USP39Q53GS9 AQP7P4-201ENST00000447083 1042 ntBASIC14.32□□□□□ -0.12
USP39Q53GS9 GNG10P1-201ENST00000452289 199 ntBASIC14.32□□□□□ -0.12
USP39Q53GS9 AQP7P2-201ENST00000453967 1041 ntBASIC14.32□□□□□ -0.12
USP39Q53GS9 RN7SL767P-201ENST00000493013 295 ntBASIC14.32□□□□□ -0.12
USP39Q53GS9 DNM1P51-201ENST00000558149 522 ntBASIC14.32□□□□□ -0.12
USP39Q53GS9 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC14.32□□□□□ -0.12
USP39Q53GS9 HKR1-225ENST00000592168 566 ntTSL 4 BASIC14.32□□□□□ -0.12
USP39Q53GS9 AL133467.4-201ENST00000602953 725 ntBASIC14.32□□□□□ -0.12
USP39Q53GS9 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 AQP7P3-201ENST00000624547 1041 ntBASIC14.32□□□□□ -0.12
USP39Q53GS9 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.32□□□□□ -0.12
USP39Q53GS9 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
USP39Q53GS9 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC14.32□□□□□ -0.12
USP39Q53GS9 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.32□□□□□ -0.12
USP39Q53GS9 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
USP39Q53GS9 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.32□□□□□ -0.12
USP39Q53GS9 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
USP39Q53GS9 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
USP39Q53GS9 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC14.32□□□□□ -0.12
USP39Q53GS9 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USP39Q53GS9 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.31□□□□□ -0.12
USP39Q53GS9 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.31□□□□□ -0.12
USP39Q53GS9 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 AL591122.2-201ENST00000624125 1853 ntBASIC14.31□□□□□ -0.12
USP39Q53GS9 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
USP39Q53GS9 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.31□□□□□ -0.12
USP39Q53GS9 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
USP39Q53GS9 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
USP39Q53GS9 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.31□□□□□ -0.12
USP39Q53GS9 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.31□□□□□ -0.12
USP39Q53GS9 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
USP39Q53GS9 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.31□□□□□ -0.12
USP39Q53GS9 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC14.31□□□□□ -0.12
USP39Q53GS9 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 BAX-205ENST00000391871 687 ntTSL 5 BASIC14.31□□□□□ -0.12
USP39Q53GS9 CELP-201ENST00000411440 1249 ntTSL 5 BASIC14.31□□□□□ -0.12
USP39Q53GS9 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 ACTG1P19-201ENST00000418987 1116 ntBASIC14.31□□□□□ -0.12
USP39Q53GS9 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC14.31□□□□□ -0.12
USP39Q53GS9 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
USP39Q53GS9 AC093909.3-201ENST00000504783 336 ntBASIC14.31□□□□□ -0.12
USP39Q53GS9 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC14.31□□□□□ -0.12
USP39Q53GS9 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC14.31□□□□□ -0.12
USP39Q53GS9 FAM86B3P-203ENST00000523992 854 ntBASIC14.31□□□□□ -0.12
USP39Q53GS9 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC14.31□□□□□ -0.12
USP39Q53GS9 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
USP39Q53GS9 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC14.31□□□□□ -0.12
USP39Q53GS9 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC14.31□□□□□ -0.12
USP39Q53GS9 AC005586.2-201ENST00000563946 837 ntBASIC14.31□□□□□ -0.12
USP39Q53GS9 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC14.31□□□□□ -0.12
USP39Q53GS9 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms