Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC15.63■□□□□ 0.09
TPM1P09493 AC107375.1-201ENST00000564464 2231 ntBASIC15.63■□□□□ 0.09
TPM1P09493 CDH11-201ENST00000268603 6857 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
TPM1P09493 CILP-201ENST00000261883 5695 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM1P09493 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC15.63■□□□□ 0.09
TPM1P09493 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC15.62■□□□□ 0.09
TPM1P09493 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC15.62■□□□□ 0.09
TPM1P09493 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM1P09493 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
TPM1P09493 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM1P09493 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM1P09493 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
TPM1P09493 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TPM1P09493 HMGA1P1-201ENST00000415560 1062 ntBASIC15.62■□□□□ 0.09
TPM1P09493 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM1P09493 KRT18P15-201ENST00000458108 1291 ntBASIC15.62■□□□□ 0.09
TPM1P09493 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.62■□□□□ 0.09
TPM1P09493 API5-211ENST00000534695 560 ntTSL 5 BASIC15.62■□□□□ 0.09
TPM1P09493 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TPM1P09493 JPT2-214ENST00000569765 782 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM1P09493 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.62■□□□□ 0.09
TPM1P09493 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
TPM1P09493 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 AC023511.2-201ENST00000618803 211 ntBASIC15.62■□□□□ 0.09
TPM1P09493 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC15.62■□□□□ 0.09
TPM1P09493 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
TPM1P09493 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TPM1P09493 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM1P09493 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.62■□□□□ 0.09
TPM1P09493 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 ZNF621-202ENST00000339296 6378 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM1P09493 AL353608.3-202ENST00000429953 4384 ntTSL 5 BASIC15.61■□□□□ 0.09
TPM1P09493 SEMA4D-212ENST00000450295 5684 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 COL3A1-201ENST00000304636 5543 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC15.61■□□□□ 0.09
TPM1P09493 AC090114.2-201ENST00000608477 7054 ntBASIC15.61■□□□□ 0.09
TPM1P09493 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC15.61■□□□□ 0.09
TPM1P09493 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC15.61■□□□□ 0.09
TPM1P09493 AL022323.5-201ENST00000624101 2059 ntBASIC15.61■□□□□ 0.09
TPM1P09493 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TPM1P09493 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC15.61■□□□□ 0.09
TPM1P09493 C5AR2-201ENST00000595464 6746 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 AL136309.1-201ENST00000403917 691 ntBASIC15.61■□□□□ 0.09
TPM1P09493 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.61■□□□□ 0.09
TPM1P09493 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.61■□□□□ 0.09
TPM1P09493 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC15.61■□□□□ 0.09
TPM1P09493 AL512310.5-201ENST00000551999 515 ntBASIC15.61■□□□□ 0.09
TPM1P09493 MIR5189-201ENST00000577370 114 ntBASIC15.61■□□□□ 0.09
TPM1P09493 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC15.61■□□□□ 0.09
TPM1P09493 CACNA2D2-202ENST00000360963 5272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC15.61■□□□□ 0.09
TPM1P09493 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 AL445250.1-201ENST00000641671 2259 ntBASIC15.61■□□□□ 0.09
TPM1P09493 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 TUBB4AP1-201ENST00000450755 1325 ntBASIC15.61■□□□□ 0.09
TPM1P09493 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC15.61■□□□□ 0.09
TPM1P09493 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM1P09493 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
TPM1P09493 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM1P09493 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM1P09493 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM1P09493 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM1P09493 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM1P09493 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM1P09493 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TPM1P09493 GZF1-202ENST00000377051 4740 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms