Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC12.98□□□□□ -0.33
NKX2-2O95096 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC12.98□□□□□ -0.33
NKX2-2O95096 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC12.97□□□□□ -0.33
NKX2-2O95096 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC12.97□□□□□ -0.33
NKX2-2O95096 DDC-214ENST00000622873 1839 ntTSL 3 BASIC12.97□□□□□ -0.33
NKX2-2O95096 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 AL358781.1-202ENST00000321081 1360 ntBASIC12.97□□□□□ -0.33
NKX2-2O95096 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
NKX2-2O95096 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
NKX2-2O95096 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 RET-205ENST00000615310 4337 ntTSL 5 BASIC12.97□□□□□ -0.33
NKX2-2O95096 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
NKX2-2O95096 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC12.97□□□□□ -0.33
NKX2-2O95096 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 PTPA-217ENST00000434095 870 ntTSL 2 BASIC12.97□□□□□ -0.33
NKX2-2O95096 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC12.97□□□□□ -0.33
NKX2-2O95096 Z97180.1-201ENST00000445173 988 ntBASIC12.97□□□□□ -0.33
NKX2-2O95096 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 AC005077.2-201ENST00000449786 690 ntBASIC12.97□□□□□ -0.33
NKX2-2O95096 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC12.97□□□□□ -0.33
NKX2-2O95096 AC008723.1-201ENST00000506922 207 ntBASIC12.97□□□□□ -0.33
NKX2-2O95096 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC12.97□□□□□ -0.33
NKX2-2O95096 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC12.97□□□□□ -0.33
NKX2-2O95096 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC12.97□□□□□ -0.33
NKX2-2O95096 MIR4754-201ENST00000582477 89 ntBASIC12.97□□□□□ -0.33
NKX2-2O95096 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
NKX2-2O95096 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
NKX2-2O95096 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
NKX2-2O95096 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
NKX2-2O95096 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
NKX2-2O95096 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC12.97□□□□□ -0.33
NKX2-2O95096 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
NKX2-2O95096 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
NKX2-2O95096 KRT8P18-201ENST00000413425 1445 ntBASIC12.96□□□□□ -0.33
NKX2-2O95096 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC12.96□□□□□ -0.33
NKX2-2O95096 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
NKX2-2O95096 AC108024.1-201ENST00000626286 1721 ntBASIC12.96□□□□□ -0.33
NKX2-2O95096 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
NKX2-2O95096 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
NKX2-2O95096 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC12.96□□□□□ -0.33
NKX2-2O95096 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC12.96□□□□□ -0.33
NKX2-2O95096 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
NKX2-2O95096 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC12.96□□□□□ -0.33
NKX2-2O95096 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
NKX2-2O95096 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
NKX2-2O95096 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
NKX2-2O95096 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC12.96□□□□□ -0.33
NKX2-2O95096 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
NKX2-2O95096 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC12.96□□□□□ -0.33
NKX2-2O95096 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
NKX2-2O95096 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
NKX2-2O95096 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC12.96□□□□□ -0.33
NKX2-2O95096 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC12.96□□□□□ -0.33
NKX2-2O95096 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC12.96□□□□□ -0.33
NKX2-2O95096 TBC1D27-202ENST00000424239 1573 ntBASIC12.96□□□□□ -0.33
NKX2-2O95096 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
NKX2-2O95096 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC12.96□□□□□ -0.33
NKX2-2O95096 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC12.96□□□□□ -0.33
NKX2-2O95096 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC12.96□□□□□ -0.33
NKX2-2O95096 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC12.96□□□□□ -0.33
NKX2-2O95096 MSRA-203ENST00000441698 788 ntTSL 2 BASIC12.96□□□□□ -0.33
NKX2-2O95096 DUTP3-201ENST00000450025 415 ntBASIC12.96□□□□□ -0.33
NKX2-2O95096 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
NKX2-2O95096 CD81-209ENST00000492627 886 ntTSL 3 BASIC12.96□□□□□ -0.33
NKX2-2O95096 ADM-202ENST00000524948 584 ntTSL 2 BASIC12.96□□□□□ -0.33
NKX2-2O95096 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC12.96□□□□□ -0.33
NKX2-2O95096 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC12.96□□□□□ -0.33
NKX2-2O95096 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC12.96□□□□□ -0.33
NKX2-2O95096 KLF17P1-201ENST00000547105 1126 ntBASIC12.96□□□□□ -0.33
NKX2-2O95096 ACTG1P17-201ENST00000558391 1119 ntBASIC12.96□□□□□ -0.33
NKX2-2O95096 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC12.96□□□□□ -0.33
NKX2-2O95096 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms