Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13CQ709C8 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13CQ709C8 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC11.29□□□□□ -0.6
VPS13CQ709C8 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13CQ709C8 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC11.29□□□□□ -0.6
VPS13CQ709C8 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
VPS13CQ709C8 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 AC022121.1-201ENST00000484584 579 ntBASIC11.28□□□□□ -0.6
VPS13CQ709C8 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 AC008622.3-201ENST00000621170 600 ntBASIC11.28□□□□□ -0.6
VPS13CQ709C8 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 PRAMEF25-201ENST00000614839 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 PRAMEF26-201ENST00000624207 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 AC007336.3-201ENST00000623886 2160 ntBASIC11.28□□□□□ -0.6
VPS13CQ709C8 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 COMMD10-207ENST00000632434 1433 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 CD8B-202ENST00000349455 849 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 RPL18AP15-201ENST00000430258 517 ntBASIC11.28□□□□□ -0.6
VPS13CQ709C8 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 RN7SL134P-201ENST00000579756 303 ntBASIC11.28□□□□□ -0.6
VPS13CQ709C8 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 LINC01230-201ENST00000625222 3017 ntBASIC11.28□□□□□ -0.6
VPS13CQ709C8 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 CCNL2P1-201ENST00000512846 969 ntBASIC11.28□□□□□ -0.6
VPS13CQ709C8 CCDC42-202ENST00000539522 1087 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 AC136475.7-201ENST00000602949 592 ntBASIC11.28□□□□□ -0.6
VPS13CQ709C8 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 SNX18-202ENST00000343017 3140 ntBASIC11.28□□□□□ -0.6
VPS13CQ709C8 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
VPS13CQ709C8 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
VPS13CQ709C8 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
VPS13CQ709C8 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
VPS13CQ709C8 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC11.27□□□□□ -0.6
VPS13CQ709C8 MGST3-204ENST00000367888 778 ntTSL 3 BASIC11.27□□□□□ -0.6
VPS13CQ709C8 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC11.27□□□□□ -0.6
VPS13CQ709C8 AC032044.1-201ENST00000570924 570 ntTSL 4 BASIC11.27□□□□□ -0.6
VPS13CQ709C8 HNRNPA1P11-201ENST00000580106 956 ntBASIC11.27□□□□□ -0.6
VPS13CQ709C8 AC018766.1-201ENST00000601211 484 ntTSL 3 BASIC11.27□□□□□ -0.6
VPS13CQ709C8 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC11.27□□□□□ -0.6
VPS13CQ709C8 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC11.27□□□□□ -0.6
VPS13CQ709C8 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC11.27□□□□□ -0.6
VPS13CQ709C8 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC11.27□□□□□ -0.6
VPS13CQ709C8 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
VPS13CQ709C8 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
VPS13CQ709C8 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC11.27□□□□□ -0.61
VPS13CQ709C8 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 U3.41-201ENST00000408711 219 ntBASIC11.27□□□□□ -0.61
VPS13CQ709C8 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC11.27□□□□□ -0.61
VPS13CQ709C8 AC009132.1-201ENST00000565194 320 ntBASIC11.27□□□□□ -0.61
VPS13CQ709C8 AC010503.4-201ENST00000615487 688 ntBASIC11.27□□□□□ -0.61
VPS13CQ709C8 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 PITPNB-201ENST00000320996 2826 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
VPS13CQ709C8 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC11.27□□□□□ -0.61
VPS13CQ709C8 AC069277.1-201ENST00000433639 1083 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC11.27□□□□□ -0.61
VPS13CQ709C8 BCAS4-206ENST00000609336 787 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
VPS13CQ709C8 INTS4P1-203ENST00000641008 3683 ntBASIC11.27□□□□□ -0.61
VPS13CQ709C8 ANKRD26P3-201ENST00000454044 2748 ntBASIC11.27□□□□□ -0.61
VPS13CQ709C8 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms