Protein–RNA interactions for Protein: P11387

TOP1, DNA topoisomerase 1, humanhuman

Known RBP Predictions only

Length 765 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP1P11387 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TOP1P11387 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TOP1P11387 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TOP1P11387 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP1P11387 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP1P11387 TCAM1P-207ENST00000485295 1537 ntBASIC16.6■□□□□ 0.25
TOP1P11387 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP1P11387 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC16.6■□□□□ 0.25
TOP1P11387 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TOP1P11387 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 AL591122.2-201ENST00000624125 1853 ntBASIC16.59■□□□□ 0.25
TOP1P11387 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 MPV17-204ENST00000399052 749 ntTSL 4 BASIC16.59■□□□□ 0.25
TOP1P11387 HINT2P1-201ENST00000419438 481 ntBASIC16.59■□□□□ 0.25
TOP1P11387 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC16.59■□□□□ 0.25
TOP1P11387 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 TMEM198B-204ENST00000484016 896 ntBASIC16.59■□□□□ 0.25
TOP1P11387 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC16.59■□□□□ 0.25
TOP1P11387 CFL1-214ENST00000534769 758 ntTSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 CMC2-204ENST00000562713 573 ntTSL 3 BASIC16.59■□□□□ 0.25
TOP1P11387 CMC2-209ENST00000565108 399 ntTSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC16.59■□□□□ 0.25
TOP1P11387 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
TOP1P11387 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
TOP1P11387 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC16.59■□□□□ 0.25
TOP1P11387 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP1P11387 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC16.58■□□□□ 0.25
TOP1P11387 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TOP1P11387 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
TOP1P11387 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TOP1P11387 CICP17-201ENST00000418553 2377 ntBASIC16.58■□□□□ 0.25
TOP1P11387 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC16.58■□□□□ 0.25
TOP1P11387 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC16.58■□□□□ 0.25
TOP1P11387 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
TOP1P11387 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC16.58■□□□□ 0.24
TOP1P11387 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
TOP1P11387 AC092506.1-202ENST00000401022 528 ntBASIC16.58■□□□□ 0.24
TOP1P11387 GGCT-203ENST00000409144 836 ntTSL 2 BASIC16.58■□□□□ 0.24
TOP1P11387 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC16.58■□□□□ 0.24
TOP1P11387 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC16.58■□□□□ 0.24
TOP1P11387 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC16.58■□□□□ 0.24
TOP1P11387 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
TOP1P11387 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
TOP1P11387 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC16.58■□□□□ 0.24
TOP1P11387 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC16.58■□□□□ 0.24
TOP1P11387 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.58■□□□□ 0.24
TOP1P11387 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC16.58■□□□□ 0.24
TOP1P11387 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC16.58■□□□□ 0.24
TOP1P11387 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC16.58■□□□□ 0.24
TOP1P11387 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
TOP1P11387 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TOP1P11387 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms