Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 SNX18-202ENST00000343017 3140 ntBASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
NPAS3Q8IXF0 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NPAS3Q8IXF0 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
NPAS3Q8IXF0 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NPAS3Q8IXF0 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NPAS3Q8IXF0 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
NPAS3Q8IXF0 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
NPAS3Q8IXF0 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NPAS3Q8IXF0 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NPAS3Q8IXF0 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NPAS3Q8IXF0 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.52□□□□□ -0.08
NPAS3Q8IXF0 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.52□□□□□ -0.08
NPAS3Q8IXF0 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NPAS3Q8IXF0 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 FAM21EP-201ENST00000417804 985 ntBASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 AC083801.1-201ENST00000491689 358 ntBASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 AC092862.1-201ENST00000541534 533 ntBASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 AC068831.5-201ENST00000557387 328 ntBASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NPAS3Q8IXF0 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 AL139158.3-201ENST00000641212 1562 ntBASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 USP17L6P-201ENST00000382470 1197 ntBASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 LINP1-201ENST00000417112 917 ntTSL 2 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 HNRNPA1P56-201ENST00000505767 954 ntBASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 COQ10BP2-201ENST00000513804 724 ntBASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC14.51□□□□□ -0.09
NPAS3Q8IXF0 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms