Protein–RNA interactions for Protein: Q9Y5F2

PCDHB11, Protocadherin beta-11, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11Q9Y5F2 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB11Q9Y5F2 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC22■■□□□ 1.11
PCDHB11Q9Y5F2 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22■■□□□ 1.11
PCDHB11Q9Y5F2 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22■■□□□ 1.11
PCDHB11Q9Y5F2 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
PCDHB11Q9Y5F2 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC22■■□□□ 1.11
PCDHB11Q9Y5F2 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
PCDHB11Q9Y5F2 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC22■■□□□ 1.11
PCDHB11Q9Y5F2 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC22■■□□□ 1.11
PCDHB11Q9Y5F2 AC092666.2-201ENST00000613287 246 ntBASIC22■■□□□ 1.11
PCDHB11Q9Y5F2 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22■■□□□ 1.11
PCDHB11Q9Y5F2 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PCDHB11Q9Y5F2 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC22■■□□□ 1.11
PCDHB11Q9Y5F2 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22■■□□□ 1.11
PCDHB11Q9Y5F2 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.99■■□□□ 1.11
PCDHB11Q9Y5F2 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
PCDHB11Q9Y5F2 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.99■■□□□ 1.11
PCDHB11Q9Y5F2 EDA-201ENST00000338901 1233 ntBASIC21.99■■□□□ 1.11
PCDHB11Q9Y5F2 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.99■■□□□ 1.11
PCDHB11Q9Y5F2 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.99■■□□□ 1.11
PCDHB11Q9Y5F2 AL355001.2-201ENST00000620617 1191 ntBASIC21.99■■□□□ 1.11
PCDHB11Q9Y5F2 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHB11Q9Y5F2 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHB11Q9Y5F2 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHB11Q9Y5F2 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHB11Q9Y5F2 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHB11Q9Y5F2 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHB11Q9Y5F2 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHB11Q9Y5F2 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHB11Q9Y5F2 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
PCDHB11Q9Y5F2 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHB11Q9Y5F2 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.96■■□□□ 1.11
PCDHB11Q9Y5F2 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDHB11Q9Y5F2 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PCDHB11Q9Y5F2 SUDS3P1-201ENST00000505831 966 ntBASIC21.96■■□□□ 1.11
PCDHB11Q9Y5F2 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
PCDHB11Q9Y5F2 DUX4L19-201ENST00000557448 1267 ntBASIC21.96■■□□□ 1.11
PCDHB11Q9Y5F2 ABCB10P4-201ENST00000566803 2184 ntBASIC21.96■■□□□ 1.11
PCDHB11Q9Y5F2 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDHB11Q9Y5F2 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB11Q9Y5F2 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 AC024257.2-201ENST00000549699 147 ntBASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 MIR5787-201ENST00000611784 55 ntBASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB11Q9Y5F2 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
PCDHB11Q9Y5F2 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PCDHB11Q9Y5F2 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
PCDHB11Q9Y5F2 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
PCDHB11Q9Y5F2 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
PCDHB11Q9Y5F2 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.92■■□□□ 1.1
PCDHB11Q9Y5F2 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.92■■□□□ 1.1
PCDHB11Q9Y5F2 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.92■■□□□ 1.1
PCDHB11Q9Y5F2 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
PCDHB11Q9Y5F2 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.92■■□□□ 1.1
PCDHB11Q9Y5F2 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.92■■□□□ 1.1
PCDHB11Q9Y5F2 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHB11Q9Y5F2 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHB11Q9Y5F2 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.92■■□□□ 1.1
PCDHB11Q9Y5F2 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms