Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
RFX3P48380 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
RFX3P48380 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.03■□□□□ 0.96
RFX3P48380 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.02■□□□□ 0.96
RFX3P48380 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.02■□□□□ 0.96
RFX3P48380 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.02■□□□□ 0.96
RFX3P48380 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RFX3P48380 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFX3P48380 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFX3P48380 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
RFX3P48380 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFX3P48380 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
RFX3P48380 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.02■□□□□ 0.96
RFX3P48380 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.02■□□□□ 0.96
RFX3P48380 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
RFX3P48380 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RFX3P48380 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
RFX3P48380 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
RFX3P48380 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
RFX3P48380 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFX3P48380 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFX3P48380 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
RFX3P48380 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RFX3P48380 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.01■□□□□ 0.95
RFX3P48380 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFX3P48380 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
RFX3P48380 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFX3P48380 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFX3P48380 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFX3P48380 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RFX3P48380 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21■□□□□ 0.95
RFX3P48380 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
RFX3P48380 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21■□□□□ 0.95
RFX3P48380 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21■□□□□ 0.95
RFX3P48380 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21■□□□□ 0.95
RFX3P48380 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RFX3P48380 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21■□□□□ 0.95
RFX3P48380 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
RFX3P48380 PKD1P6-201ENST00000343738 4769 ntBASIC21■□□□□ 0.95
RFX3P48380 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RFX3P48380 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21■□□□□ 0.95
RFX3P48380 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21■□□□□ 0.95
RFX3P48380 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RFX3P48380 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21■□□□□ 0.95
RFX3P48380 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RFX3P48380 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RFX3P48380 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RFX3P48380 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX3P48380 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX3P48380 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX3P48380 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX3P48380 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX3P48380 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
RFX3P48380 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.99■□□□□ 0.95
RFX3P48380 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.99■□□□□ 0.95
RFX3P48380 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.99■□□□□ 0.95
RFX3P48380 AC010997.5-201ENST00000609182 354 ntBASIC20.99■□□□□ 0.95
RFX3P48380 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.99■□□□□ 0.95
RFX3P48380 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX3P48380 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RFX3P48380 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX3P48380 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX3P48380 AC068473.5-201ENST00000616428 2072 ntBASIC20.98■□□□□ 0.95
RFX3P48380 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFX3P48380 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
RFX3P48380 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
RFX3P48380 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.98■□□□□ 0.95
RFX3P48380 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.98■□□□□ 0.95
RFX3P48380 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFX3P48380 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFX3P48380 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.98■□□□□ 0.95
RFX3P48380 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFX3P48380 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RFX3P48380 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RFX3P48380 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFX3P48380 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
RFX3P48380 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFX3P48380 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.97■□□□□ 0.95
RFX3P48380 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFX3P48380 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFX3P48380 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RFX3P48380 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RFX3P48380 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.97■□□□□ 0.95
RFX3P48380 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFX3P48380 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.97■□□□□ 0.95
RFX3P48380 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFX3P48380 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFX3P48380 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RFX3P48380 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RFX3P48380 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.96■□□□□ 0.95
RFX3P48380 UNC93B8-201ENST00000511903 705 ntBASIC20.96■□□□□ 0.95
RFX3P48380 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.96■□□□□ 0.95
RFX3P48380 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFX3P48380 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RFX3P48380 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFX3P48380 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFX3P48380 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFX3P48380 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.95■□□□□ 0.94
RFX3P48380 MIR6722-201ENST00000617286 78 ntBASIC20.95■□□□□ 0.94
RFX3P48380 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms