Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 VPS53-216ENST00000574029 585 ntTSL 4 BASIC30.26■■■□□ 2.43
COL18A1P39060 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC30.26■■■□□ 2.43
COL18A1P39060 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
COL18A1P39060 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
COL18A1P39060 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC30.25■■■□□ 2.43
COL18A1P39060 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC30.25■■■□□ 2.43
COL18A1P39060 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC30.25■■■□□ 2.43
COL18A1P39060 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC30.24■■■□□ 2.43
COL18A1P39060 KRT18P61-201ENST00000585825 1298 ntBASIC30.24■■■□□ 2.43
COL18A1P39060 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC30.24■■■□□ 2.43
COL18A1P39060 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL18A1P39060 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC30.23■■■□□ 2.43
COL18A1P39060 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
COL18A1P39060 AL499627.2-201ENST00000606283 725 ntBASIC30.23■■■□□ 2.43
COL18A1P39060 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL18A1P39060 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
COL18A1P39060 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL18A1P39060 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC30.23■■■□□ 2.43
COL18A1P39060 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC30.23■■■□□ 2.43
COL18A1P39060 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL18A1P39060 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL18A1P39060 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL18A1P39060 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL18A1P39060 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL18A1P39060 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL18A1P39060 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
COL18A1P39060 ID1-201ENST00000376105 1233 ntBASIC30.22■■■□□ 2.43
COL18A1P39060 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
COL18A1P39060 OR2I1P-207ENST00000453522 948 ntBASIC30.22■■■□□ 2.43
COL18A1P39060 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC30.21■■■□□ 2.43
COL18A1P39060 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC30.21■■■□□ 2.43
COL18A1P39060 AC133637.1-201ENST00000624115 1537 ntBASIC30.21■■■□□ 2.43
COL18A1P39060 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL18A1P39060 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC30.21■■■□□ 2.43
COL18A1P39060 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC30.21■■■□□ 2.43
COL18A1P39060 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC30.21■■■□□ 2.43
COL18A1P39060 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL18A1P39060 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC30.2■■■□□ 2.43
COL18A1P39060 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC30.2■■■□□ 2.43
COL18A1P39060 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC30.2■■■□□ 2.43
COL18A1P39060 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
COL18A1P39060 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
COL18A1P39060 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC30.2■■■□□ 2.43
COL18A1P39060 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
COL18A1P39060 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC30.2■■■□□ 2.42
COL18A1P39060 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC30.2■■■□□ 2.42
COL18A1P39060 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC30.2■■■□□ 2.42
COL18A1P39060 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC30.19■■■□□ 2.42
COL18A1P39060 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
COL18A1P39060 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
COL18A1P39060 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC30.19■■■□□ 2.42
COL18A1P39060 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC30.19■■■□□ 2.42
COL18A1P39060 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC30.19■■■□□ 2.42
COL18A1P39060 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
COL18A1P39060 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
COL18A1P39060 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
COL18A1P39060 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
COL18A1P39060 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL18A1P39060 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC30.18■■■□□ 2.42
COL18A1P39060 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC30.18■■■□□ 2.42
COL18A1P39060 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC30.18■■■□□ 2.42
COL18A1P39060 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC30.17■■■□□ 2.42
COL18A1P39060 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC30.17■■■□□ 2.42
COL18A1P39060 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL18A1P39060 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC30.17■■■□□ 2.42
COL18A1P39060 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
COL18A1P39060 AC091060.1-201ENST00000623524 1766 ntBASIC30.17■■■□□ 2.42
COL18A1P39060 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
COL18A1P39060 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
COL18A1P39060 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
COL18A1P39060 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC30.16■■■□□ 2.42
COL18A1P39060 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC30.16■■■□□ 2.42
COL18A1P39060 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
COL18A1P39060 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
COL18A1P39060 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
COL18A1P39060 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL18A1P39060 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC30.15■■■□□ 2.42
COL18A1P39060 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
COL18A1P39060 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL18A1P39060 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC30.15■■■□□ 2.42
COL18A1P39060 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL18A1P39060 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL18A1P39060 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
COL18A1P39060 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC30.15■■■□□ 2.42
COL18A1P39060 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
COL18A1P39060 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL18A1P39060 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
COL18A1P39060 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL18A1P39060 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
COL18A1P39060 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL18A1P39060 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL18A1P39060 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC30.15■■■□□ 2.42
COL18A1P39060 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC30.14■■■□□ 2.42
COL18A1P39060 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
COL18A1P39060 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC30.14■■■□□ 2.41
COL18A1P39060 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
COL18A1P39060 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC30.13■■■□□ 2.41
COL18A1P39060 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
COL18A1P39060 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
COL18A1P39060 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms