Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.36■■□□□ 1.01
CPSF4O95639 AL033527.3-201ENST00000566366 1196 ntBASIC21.36■■□□□ 1.01
CPSF4O95639 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.36■■□□□ 1.01
CPSF4O95639 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4O95639 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.36■■□□□ 1.01
CPSF4O95639 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.36■■□□□ 1.01
CPSF4O95639 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4O95639 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
CPSF4O95639 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4O95639 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.36■■□□□ 1.01
CPSF4O95639 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4O95639 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4O95639 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4O95639 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.35■■□□□ 1.01
CPSF4O95639 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4O95639 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4O95639 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4O95639 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4O95639 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4O95639 AC012354.3-201ENST00000623734 483 ntBASIC21.35■■□□□ 1.01
CPSF4O95639 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4O95639 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.35■■□□□ 1.01
CPSF4O95639 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4O95639 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4O95639 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4O95639 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
CPSF4O95639 PKD1P6-201ENST00000343738 4769 ntBASIC21.35■■□□□ 1.01
CPSF4O95639 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CPSF4O95639 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CPSF4O95639 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
CPSF4O95639 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CPSF4O95639 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CPSF4O95639 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.34■■□□□ 1.01
CPSF4O95639 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
CPSF4O95639 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CPSF4O95639 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
CPSF4O95639 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CPSF4O95639 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CPSF4O95639 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
CPSF4O95639 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CPSF4O95639 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CPSF4O95639 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.33■■□□□ 1.01
CPSF4O95639 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
CPSF4O95639 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.33■■□□□ 1
CPSF4O95639 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CPSF4O95639 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CPSF4O95639 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CPSF4O95639 AL117328.2-201ENST00000624617 1940 ntBASIC21.32■■□□□ 1
CPSF4O95639 AC004448.1-201ENST00000458332 883 ntBASIC21.32■■□□□ 1
CPSF4O95639 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.32■■□□□ 1
CPSF4O95639 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CPSF4O95639 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.32■■□□□ 1
CPSF4O95639 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.32■■□□□ 1
CPSF4O95639 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.32■■□□□ 1
CPSF4O95639 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.32■■□□□ 1
CPSF4O95639 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CPSF4O95639 KRT8P33-201ENST00000508125 1423 ntBASIC21.31■■□□□ 1
CPSF4O95639 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.31■■□□□ 1
CPSF4O95639 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.31■■□□□ 1
CPSF4O95639 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.31■■□□□ 1
CPSF4O95639 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
CPSF4O95639 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CPSF4O95639 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.31■■□□□ 1
CPSF4O95639 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.31■■□□□ 1
CPSF4O95639 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CPSF4O95639 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
CPSF4O95639 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.31■■□□□ 1
CPSF4O95639 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CPSF4O95639 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CPSF4O95639 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CPSF4O95639 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.3■■□□□ 1
CPSF4O95639 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CPSF4O95639 AC079630.1-202ENST00000618127 1840 ntBASIC21.3■■□□□ 1
CPSF4O95639 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CPSF4O95639 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
CPSF4O95639 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.3■■□□□ 1
CPSF4O95639 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.3■■□□□ 1
CPSF4O95639 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.3■■□□□ 1
CPSF4O95639 MIR4508-201ENST00000584178 70 ntBASIC21.3■■□□□ 1
CPSF4O95639 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CPSF4O95639 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CPSF4O95639 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.29■■□□□ 1
CPSF4O95639 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
CPSF4O95639 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CPSF4O95639 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CPSF4O95639 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.29■■□□□ 1
CPSF4O95639 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CPSF4O95639 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.29■■□□□ 1
CPSF4O95639 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.29■■□□□ 1
CPSF4O95639 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.29■■□□□ 1
CPSF4O95639 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
CPSF4O95639 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CPSF4O95639 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CPSF4O95639 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CPSF4O95639 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CPSF4O95639 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CPSF4O95639 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.28■■□□□ 1
CPSF4O95639 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.28■■□□□ 1
CPSF4O95639 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CPSF4O95639 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms