Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC13.83□□□□□ -0.19
CCDC3Q9BQI4 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.83□□□□□ -0.19
CCDC3Q9BQI4 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC3Q9BQI4 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.83□□□□□ -0.19
CCDC3Q9BQI4 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.83□□□□□ -0.19
CCDC3Q9BQI4 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC3Q9BQI4 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.83□□□□□ -0.19
CCDC3Q9BQI4 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC13.83□□□□□ -0.19
CCDC3Q9BQI4 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 LINC01815-202ENST00000641468 1409 ntBASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 DBP-202ENST00000593500 712 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 AC005041.3-201ENST00000606287 649 ntBASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 AC006372.4-201ENST00000624122 1543 ntBASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC3Q9BQI4 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 IL9RP3-201ENST00000442856 1674 ntBASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 STRCP1-201ENST00000509801 5328 ntBASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 DPY19L2P5-201ENST00000456300 331 ntBASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 OR5BD1P-201ENST00000532527 817 ntBASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 NEU3-207ENST00000534628 746 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 RN7SL665P-201ENST00000578793 300 ntBASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 MIR2392-201ENST00000584881 84 ntBASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC3Q9BQI4 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms