Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 HAO1-201ENST00000378789 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 PARN-202ENST00000420015 2360 ntTSL 2 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 TAGLN2-201ENST00000320307 709 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 AC053503.4-201ENST00000431827 224 ntTSL 5 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 PRDX2P3-201ENST00000515779 586 ntBASIC13.48□□□□□ -0.25
VPS13AQ96RL7 OR4A49P-201ENST00000527050 632 ntBASIC13.48□□□□□ -0.25
VPS13AQ96RL7 AL583722.3-201ENST00000553433 503 ntTSL 4 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 AC010547.1-202ENST00000567341 230 ntTSL 2 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 AC092296.1-201ENST00000587018 566 ntTSL 4 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 AL078624.1-201ENST00000604004 547 ntBASIC13.48□□□□□ -0.25
VPS13AQ96RL7 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 AL121972.2-201ENST00000431108 556 ntTSL 4 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 SMCO4-202ENST00000525141 889 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 ZNF720-211ENST00000539915 837 ntTSL 3 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 AC009779.7-201ENST00000609031 469 ntBASIC13.48□□□□□ -0.25
VPS13AQ96RL7 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 KRT8P25-201ENST00000473150 1456 ntBASIC13.48□□□□□ -0.25
VPS13AQ96RL7 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 TGM3-201ENST00000381458 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 PHBP3-201ENST00000412562 819 ntBASIC13.48□□□□□ -0.25
VPS13AQ96RL7 AC074019.1-201ENST00000428788 1096 ntBASIC13.48□□□□□ -0.25
VPS13AQ96RL7 TRPM1-210ENST00000559179 1002 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 MIR100HG-219ENST00000533109 1794 ntTSL 5 BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13AQ96RL7 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 POU5F1-202ENST00000441888 1055 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 ZNF677-207ENST00000598806 701 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 AL161937.2-201ENST00000615503 403 ntTSL 2 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 BANP-201ENST00000286122 2368 ntTSL 5 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC13.47□□□□□ -0.25
VPS13AQ96RL7 REG3A-201ENST00000305165 718 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 RNA5SP84-201ENST00000364740 107 ntBASIC13.46□□□□□ -0.25
VPS13AQ96RL7 MAP1LC3BP1-202ENST00000438342 516 ntTSL 3 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms