Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NUP98P52948 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
NUP98P52948 MIR6816-201ENST00000620368 66 ntBASIC17.04■□□□□ 0.32
NUP98P52948 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC17.04■□□□□ 0.32
NUP98P52948 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC17.04■□□□□ 0.32
NUP98P52948 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NUP98P52948 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
NUP98P52948 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NUP98P52948 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
NUP98P52948 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NUP98P52948 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
NUP98P52948 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
NUP98P52948 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NUP98P52948 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NUP98P52948 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NUP98P52948 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 KRT8P24-201ENST00000560290 1559 ntBASIC17.03■□□□□ 0.32
NUP98P52948 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.03■□□□□ 0.32
NUP98P52948 GH1-203ENST00000351388 685 ntTSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC17.03■□□□□ 0.32
NUP98P52948 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC17.03■□□□□ 0.32
NUP98P52948 AC004923.3-201ENST00000527532 355 ntBASIC17.03■□□□□ 0.32
NUP98P52948 PHBP18-201ENST00000546648 813 ntBASIC17.03■□□□□ 0.32
NUP98P52948 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 RN7SL162P-201ENST00000579233 292 ntBASIC17.03■□□□□ 0.32
NUP98P52948 NEK4P3-201ENST00000604859 544 ntBASIC17.03■□□□□ 0.32
NUP98P52948 PTPN20CP-201ENST00000614090 920 ntBASIC17.03■□□□□ 0.32
NUP98P52948 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
NUP98P52948 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC17.03■□□□□ 0.32
NUP98P52948 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
NUP98P52948 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 ZSCAN5DP-201ENST00000600684 1488 ntBASIC17.03■□□□□ 0.32
NUP98P52948 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC17.03■□□□□ 0.32
NUP98P52948 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC17.03■□□□□ 0.32
NUP98P52948 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
NUP98P52948 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC17.03■□□□□ 0.32
NUP98P52948 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
NUP98P52948 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
NUP98P52948 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
NUP98P52948 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC17.03■□□□□ 0.32
NUP98P52948 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 AC004895.1-202ENST00000435547 547 ntTSL 5 BASIC17.03■□□□□ 0.32
NUP98P52948 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC17.03■□□□□ 0.32
NUP98P52948 KRT19P4-201ENST00000443208 943 ntBASIC17.03■□□□□ 0.32
NUP98P52948 AC104212.2-201ENST00000478813 628 ntBASIC17.03■□□□□ 0.32
NUP98P52948 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
NUP98P52948 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
NUP98P52948 AGAP10P-201ENST00000454844 2418 ntBASIC17.03■□□□□ 0.32
NUP98P52948 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NUP98P52948 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC17.03■□□□□ 0.32
NUP98P52948 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
NUP98P52948 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
NUP98P52948 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NUP98P52948 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
NUP98P52948 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
NUP98P52948 GPN1-211ENST00000610189 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
NUP98P52948 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NUP98P52948 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
NUP98P52948 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NUP98P52948 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
NUP98P52948 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
NUP98P52948 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NUP98P52948 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
NUP98P52948 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NUP98P52948 RBP4-203ENST00000371469 814 ntTSL 5 BASIC17.02■□□□□ 0.31
NUP98P52948 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC17.02■□□□□ 0.31
NUP98P52948 KRT8P30-201ENST00000432100 650 ntBASIC17.02■□□□□ 0.31
NUP98P52948 CCND3P1-201ENST00000438347 580 ntBASIC17.02■□□□□ 0.31
NUP98P52948 AC233724.9-201ENST00000511694 407 ntBASIC17.02■□□□□ 0.31
NUP98P52948 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC17.02■□□□□ 0.31
NUP98P52948 AC010202.1-201ENST00000551181 405 ntBASIC17.02■□□□□ 0.31
NUP98P52948 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC17.02■□□□□ 0.31
NUP98P52948 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
NUP98P52948 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC17.02■□□□□ 0.31
NUP98P52948 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms