Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIG3P49916 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIG3P49916 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIG3P49916 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIG3P49916 AP000437.1-201ENST00000624057 2085 ntBASIC15.02□□□□□ -0.01
LIG3P49916 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIG3P49916 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIG3P49916 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.02□□□□□ -0.01
LIG3P49916 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LIG3P49916 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIG3P49916 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIG3P49916 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC15.01□□□□□ -0.01
LIG3P49916 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
LIG3P49916 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
LIG3P49916 AC015819.3-201ENST00000624305 2674 ntBASIC15.01□□□□□ -0.01
LIG3P49916 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
LIG3P49916 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC15.01□□□□□ -0.01
LIG3P49916 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.01□□□□□ -0.01
LIG3P49916 BX324167.2-201ENST00000623717 3316 ntBASIC15.01□□□□□ -0.01
LIG3P49916 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.01□□□□□ -0.01
LIG3P49916 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
LIG3P49916 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
LIG3P49916 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
LIG3P49916 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC15.01□□□□□ -0.01
LIG3P49916 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC15.01□□□□□ -0.01
LIG3P49916 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 PPY2P-201ENST00000582808 702 ntBASIC15.01□□□□□ -0.01
LIG3P49916 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
LIG3P49916 AL031719.1-201ENST00000623365 2587 ntBASIC15.01□□□□□ -0.01
LIG3P49916 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 PCDHA5-203ENST00000614258 4248 ntBASIC15.01□□□□□ -0.01
LIG3P49916 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
LIG3P49916 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
LIG3P49916 KRT8P4-201ENST00000509735 1454 ntBASIC15.01□□□□□ -0.01
LIG3P49916 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
LIG3P49916 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIG3P49916 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.01□□□□□ -0.01
LIG3P49916 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.01□□□□□ -0.01
LIG3P49916 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
LIG3P49916 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15□□□□□ -0.01
LIG3P49916 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 AL354702.1-201ENST00000442006 1960 ntBASIC15□□□□□ -0.01
LIG3P49916 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC15□□□□□ -0.01
LIG3P49916 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15□□□□□ -0.01
LIG3P49916 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15□□□□□ -0.01
LIG3P49916 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC15□□□□□ -0.01
LIG3P49916 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15□□□□□ -0.01
LIG3P49916 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15□□□□□ -0.01
LIG3P49916 Z93015.1-201ENST00000451718 390 ntBASIC15□□□□□ -0.01
LIG3P49916 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15□□□□□ -0.01
LIG3P49916 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15□□□□□ -0.01
LIG3P49916 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
LIG3P49916 FAM86HP-204ENST00000513466 959 ntBASIC15□□□□□ -0.01
LIG3P49916 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
LIG3P49916 ACR-203ENST00000529621 708 ntTSL 5 BASIC15□□□□□ -0.01
LIG3P49916 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15□□□□□ -0.01
LIG3P49916 MIR4538-201ENST00000581377 78 ntBASIC15□□□□□ -0.01
LIG3P49916 EEF1DP1-201ENST00000585891 896 ntBASIC15□□□□□ -0.01
LIG3P49916 CD22-209ENST00000594250 2107 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC15□□□□□ -0.01
LIG3P49916 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15□□□□□ -0.01
LIG3P49916 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15□□□□□ -0.01
LIG3P49916 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15□□□□□ -0.01
LIG3P49916 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms