Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CENPM-206ENST00000407253 818 ntTSL 2 BASIC11□□□□□ -0.65
CXCL1P09341 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC11□□□□□ -0.65
CXCL1P09341 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC11□□□□□ -0.65
CXCL1P09341 FDX1P1-201ENST00000449115 551 ntBASIC11□□□□□ -0.65
CXCL1P09341 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC11□□□□□ -0.65
CXCL1P09341 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC11□□□□□ -0.65
CXCL1P09341 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 GPX4-206ENST00000588919 803 ntTSL 2 BASIC11□□□□□ -0.65
CXCL1P09341 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC11□□□□□ -0.65
CXCL1P09341 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
CXCL1P09341 NME4-212ENST00000621774 904 ntTSL 3 BASIC11□□□□□ -0.65
CXCL1P09341 AL109936.8-201ENST00000641772 604 ntBASIC11□□□□□ -0.65
CXCL1P09341 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
CXCL1P09341 AC009549.1-201ENST00000603468 1686 ntBASIC11□□□□□ -0.65
CXCL1P09341 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
CXCL1P09341 PBOV1-201ENST00000527246 2506 ntAPPRIS P1 BASIC11□□□□□ -0.65
CXCL1P09341 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 RERG-209ENST00000546331 1383 ntTSL 2 BASIC11□□□□□ -0.65
CXCL1P09341 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC11□□□□□ -0.65
CXCL1P09341 FAS-204ENST00000355740 2563 ntAPPRIS P4 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 LPCAT2-201ENST00000262134 5391 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 RNF170-206ENST00000527424 3880 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 SHC1-210ENST00000448116 3481 ntAPPRIS ALT1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 ARAP1-209ENST00000455638 2683 ntTSL 5 BASIC11□□□□□ -0.65
CXCL1P09341 APEH-201ENST00000296456 3220 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 ARHGEF9-203ENST00000374872 2364 ntTSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 PSAP-201ENST00000394934 2830 ntAPPRIS ALT1 TSL 5 BASIC10.99□□□□□ -0.65
CXCL1P09341 SMCR5-201ENST00000543475 2844 ntBASIC10.99□□□□□ -0.65
CXCL1P09341 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC10.99□□□□□ -0.65
CXCL1P09341 AIF1L-204ENST00000372300 3284 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 FAM95C-205ENST00000637556 2421 ntAPPRIS P5 TSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 PI4KB-201ENST00000368872 3331 ntAPPRIS ALT1 TSL 5 BASIC10.99□□□□□ -0.65
CXCL1P09341 SEC24B-202ENST00000399100 3780 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 NECTIN2-201ENST00000252483 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 FAM177A1-201ENST00000280987 2927 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 DYSF-203ENST00000409366 6606 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 DYSF-205ENST00000409651 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 FGF23-201ENST00000237837 3018 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 DCAF16-201ENST00000382247 4548 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 RALGDS-203ENST00000372062 3596 ntAPPRIS ALT2 TSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 AL139011.2-201ENST00000556710 2635 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 HPSE-201ENST00000311412 4615 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 FSCN3-201ENST00000265825 2238 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 LRFN5-201ENST00000298119 3723 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 RIC8A-203ENST00000526104 3703 ntAPPRIS ALT1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 B9D1-203ENST00000395615 805 ntTSL 3 BASIC10.99□□□□□ -0.65
CXCL1P09341 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC10.99□□□□□ -0.65
CXCL1P09341 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC10.99□□□□□ -0.65
CXCL1P09341 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC10.99□□□□□ -0.65
CXCL1P09341 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC10.99□□□□□ -0.65
CXCL1P09341 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC10.99□□□□□ -0.65
CXCL1P09341 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 LINC01428-201ENST00000449581 874 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC10.99□□□□□ -0.65
CXCL1P09341 KLK3-207ENST00000595952 969 ntTSL 3 BASIC10.99□□□□□ -0.65
CXCL1P09341 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
CXCL1P09341 PRSS30P-206ENST00000641773 873 ntBASIC10.99□□□□□ -0.65
CXCL1P09341 TXNDC2-202ENST00000357775 2830 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 LIMCH1-213ENST00000511496 3439 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 CASC15-204ENST00000606197 3969 ntTSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 ZNF621-201ENST00000310898 2404 ntTSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 PCNX4-202ENST00000391611 4073 ntTSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 GJB5-201ENST00000338513 1355 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 BDNF-208ENST00000418212 4125 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 CD99L2-203ENST00000370377 3604 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 RANGAP1-201ENST00000356244 3060 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 AC009533.1-201ENST00000539757 3158 ntBASIC10.99□□□□□ -0.65
CXCL1P09341 KIAA1958-202ENST00000374244 2643 ntAPPRIS ALT1 TSL 5 BASIC10.99□□□□□ -0.65
CXCL1P09341 ZC3H18-202ENST00000452588 3211 ntTSL 2 BASIC10.99□□□□□ -0.65
CXCL1P09341 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 CASP7-201ENST00000345633 2659 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms