RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PELP1Q8IZL8 1130 aaKnown RBP20.84■□□□□ 0.93
LIMCH1-213ENST00000511496 HRCP23327 699 aa20.57■□□□□ 0.88
LIMCH1-213ENST00000511496 PPARGC1BQ86YN6 1023 aaKnown RBP20.34■□□□□ 0.85
LIMCH1-213ENST00000511496 MYT1Q01538 1121 aa20.2■□□□□ 0.82
LIMCH1-213ENST00000511496 NISCHQ9Y2I1 1504 aa20.07■□□□□ 0.8
LIMCH1-213ENST00000511496 PCGF6Q9BYE7 350 aa20.01■□□□□ 0.79
LIMCH1-213ENST00000511496 SCAF1Q9H7N4 1312 aaKnown RBP19.93■□□□□ 0.78
LIMCH1-213ENST00000511496 SUPT5HO00267 1087 aaKnown RBP19.25■□□□□ 0.67
LIMCH1-213ENST00000511496 GTF3C3Q9Y5Q9 886 aa19.19■□□□□ 0.66
LIMCH1-213ENST00000511496 ACIN1Q9UKV3 1341 aaKnown RBP19.19■□□□□ 0.66
LIMCH1-213ENST00000511496 NEUROD1Q13562 356 aa19.17■□□□□ 0.66
LIMCH1-213ENST00000511496 MYO15BQ96JP2 1530 aa19.15■□□□□ 0.66
LIMCH1-213ENST00000511496 TTBK1Q5TCY1 1321 aaPredicted RBP19.07■□□□□ 0.64
LIMCH1-213ENST00000511496 BCL11AQ9H165 835 aa19.02■□□□□ 0.63
LIMCH1-213ENST00000511496 ZEB1P37275 1124 aaPredicted RBP19■□□□□ 0.63
LIMCH1-213ENST00000511496 SHROOM4Q9ULL8 1493 aa18.97■□□□□ 0.63
LIMCH1-213ENST00000511496 TRIM26Q12899 539 aaPredicted RBP18.97■□□□□ 0.63
LIMCH1-213ENST00000511496 CHIC1Q5VXU3 224 aa18.94■□□□□ 0.62
LIMCH1-213ENST00000511496 CENPBP07199 599 aaPredicted RBP18.9■□□□□ 0.62
LIMCH1-213ENST00000511496 FAM9AQ8IZU1 332 aaPredicted RBP18.86■□□□□ 0.61
LIMCH1-213ENST00000511496 PRKCSHP14314 528 aaPredicted RBP18.79■□□□□ 0.6
LIMCH1-213ENST00000511496 LOC105371045A0A1W2PR82 267 aa18.78■□□□□ 0.6
LIMCH1-213ENST00000511496 DCAF1Q9Y4B6 1507 aa18.74■□□□□ 0.59
LIMCH1-213ENST00000511496 CCDC180Q9P1Z9 1646 aa18.56■□□□□ 0.56
LIMCH1-213ENST00000511496 YTHDC1Q96MU7 727 aaKnown RBP18.55■□□□□ 0.56
LIMCH1-213ENST00000511496 DIEXFQ68CQ4 756 aaKnown RBP18.54■□□□□ 0.56
LIMCH1-213ENST00000511496 ANP32EQ9BTT0 268 aa18.49■□□□□ 0.55
LIMCH1-213ENST00000511496 CSRNP3Q8WYN3 585 aa18.4■□□□□ 0.54
LIMCH1-213ENST00000511496 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.29■□□□□ 0.52
LIMCH1-213ENST00000511496 ERICH6Q7L0X2 663 aa18.26■□□□□ 0.51
LIMCH1-213ENST00000511496 CCER1Q8TC90 406 aaPredicted RBP18.26■□□□□ 0.51
LIMCH1-213ENST00000511496 TSHZ2Q9NRE2 1034 aa18.1■□□□□ 0.49
LIMCH1-213ENST00000511496 EHMT2Q96KQ7 1210 aa18.04■□□□□ 0.48
LIMCH1-213ENST00000511496 MIER1Q8N108 512 aa18.01■□□□□ 0.47
LIMCH1-213ENST00000511496 TRIM41Q8WV44 630 aa17.99■□□□□ 0.47
LIMCH1-213ENST00000511496 SUPT16HQ9Y5B9 1047 aaKnown RBP17.98■□□□□ 0.47
LIMCH1-213ENST00000511496 APLP2Q06481 763 aa17.98■□□□□ 0.47
LIMCH1-213ENST00000511496 ZNF316A6NFI3 1004 aaPredicted RBP17.94■□□□□ 0.46
LIMCH1-213ENST00000511496 ANO8Q9HCE9 1232 aaPredicted RBP17.85■□□□□ 0.45
LIMCH1-213ENST00000511496 BCANQ96GW7 911 aa17.76■□□□□ 0.43
LIMCH1-213ENST00000511496 CLSPNQ9HAW4 1339 aa17.67■□□□□ 0.42
LIMCH1-213ENST00000511496 RBM19Q9Y4C8 960 aaKnown RBP17.65■□□□□ 0.42
LIMCH1-213ENST00000511496 CCDC136Q96JN2 1154 aa17.58■□□□□ 0.41
LIMCH1-213ENST00000511496 SALL2Q9Y467 1007 aaPredicted RBP17.55■□□□□ 0.4
LIMCH1-213ENST00000511496 MSH5O43196 834 aa17.54■□□□□ 0.4
LIMCH1-213ENST00000511496 DEKP35659 375 aaKnown RBP17.5■□□□□ 0.39
LIMCH1-213ENST00000511496 FKBP8Q14318 412 aa17.47■□□□□ 0.39
LIMCH1-213ENST00000511496 DCAF8L2P0C7V8 631 aa17.45■□□□□ 0.38
LIMCH1-213ENST00000511496 ITGAEP38570 1179 aa17.44■□□□□ 0.38
LIMCH1-213ENST00000511496 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.37■□□□□ 0.37
LIMCH1-213ENST00000511496 UBE2Q2Q8WVN8 375 aa17.34■□□□□ 0.37
LIMCH1-213ENST00000511496 RTN4Q9NQC3 1192 aaKnown RBP17.31■□□□□ 0.36
LIMCH1-213ENST00000511496 MYT1LQ9UL68 1186 aa17.28■□□□□ 0.36
LIMCH1-213ENST00000511496 NEFLP07196 543 aa17.28■□□□□ 0.36
LIMCH1-213ENST00000511496 NBR1Q14596 966 aa17.24■□□□□ 0.35
LIMCH1-213ENST00000511496 KCNH8Q96L42 1107 aa17.22■□□□□ 0.35
LIMCH1-213ENST00000511496 HNRNPUL2Q1KMD3 747 aaKnown RBP17.19■□□□□ 0.34
LIMCH1-213ENST00000511496 ERICH6BQ5W0A0 696 aa17.18■□□□□ 0.34
LIMCH1-213ENST00000511496 FANCIQ9NVI1 1328 aa17.17■□□□□ 0.34
LIMCH1-213ENST00000511496 IL27Q8NEV9 243 aa17.17■□□□□ 0.34
LIMCH1-213ENST00000511496 EIF5BO60841 1220 aaKnown RBP17.15■□□□□ 0.34
LIMCH1-213ENST00000511496 ZCCHC6Q5VYS8 1495 aaKnown RBP17.12■□□□□ 0.33
LIMCH1-213ENST00000511496 CDK11AQ9UQ88 783 aaPredicted RBP17.1■□□□□ 0.33
LIMCH1-213ENST00000511496 PKNOX2Q96KN3 472 aa17.03■□□□□ 0.32
LIMCH1-213ENST00000511496 TRIM52Q96A61 297 aa16.99■□□□□ 0.31
LIMCH1-213ENST00000511496 RTL5Q5HYW3 569 aaPredicted RBP16.98■□□□□ 0.31
LIMCH1-213ENST00000511496 IRX6P78412 446 aaPredicted RBP16.97■□□□□ 0.31
LIMCH1-213ENST00000511496 PLEKHG5O94827 1062 aa16.94■□□□□ 0.3
LIMCH1-213ENST00000511496 NOP58Q9Y2X3 529 aaKnown RBP16.94■□□□□ 0.3
LIMCH1-213ENST00000511496 PAK3O75914 559 aaPredicted RBP16.92■□□□□ 0.3
LIMCH1-213ENST00000511496 SLC24A1O60721 1099 aa16.82■□□□□ 0.28
LIMCH1-213ENST00000511496 TIMELESSQ9UNS1 1208 aa16.8■□□□□ 0.28
LIMCH1-213ENST00000511496 DDX10Q13206 875 aaKnown RBP16.79■□□□□ 0.28
LIMCH1-213ENST00000511496 PODXL2Q9NZ53 605 aa16.79■□□□□ 0.28
LIMCH1-213ENST00000511496 WRNQ14191 1432 aaPredicted RBP eCLIP16.74■□□□□ 0.27
LIMCH1-213ENST00000511496 CEP162Q5TB80 1403 aa16.7■□□□□ 0.26
LIMCH1-213ENST00000511496 UBTFP17480 764 aaKnown RBP16.7■□□□□ 0.26
LIMCH1-213ENST00000511496 ZBTB47Q9UFB7 747 aaPredicted RBP16.7■□□□□ 0.26
LIMCH1-213ENST00000511496 BRPF3Q9ULD4 1205 aa16.68■□□□□ 0.26
LIMCH1-213ENST00000511496 B4GALNT3Q6L9W6 998 aa16.67■□□□□ 0.26
LIMCH1-213ENST00000511496 ANP32AP39687 249 aaKnown RBP16.65■□□□□ 0.26
LIMCH1-213ENST00000511496 VSIG10Q8N0Z9 540 aa16.64■□□□□ 0.25
LIMCH1-213ENST00000511496 PPP4R2Q9NY27 417 aa16.61■□□□□ 0.25
LIMCH1-213ENST00000511496 ZMYND15Q9H091 742 aa16.61■□□□□ 0.25
LIMCH1-213ENST00000511496 IPO9Q96P70 1041 aaKnown RBP16.61■□□□□ 0.25
LIMCH1-213ENST00000511496 NEFMP07197 916 aa16.6■□□□□ 0.25
LIMCH1-213ENST00000511496 LAS1LQ9Y4W2 734 aaKnown RBP16.6■□□□□ 0.25
LIMCH1-213ENST00000511496 GLIPR1L2Q4G1C9 344 aa16.6■□□□□ 0.25
LIMCH1-213ENST00000511496 HNRNPUQ00839 825 aaKnown RBP eCLIP16.59■□□□□ 0.25
LIMCH1-213ENST00000511496 ANP32CO43423 234 aa16.58■□□□□ 0.24
LIMCH1-213ENST00000511496 RB1CC1Q8TDY2 1594 aa16.58■□□□□ 0.24
LIMCH1-213ENST00000511496 HIRIP3Q9BW71 556 aaPredicted RBP16.58■□□□□ 0.24
LIMCH1-213ENST00000511496 DHX57Q6P158 1386 aaKnown RBP16.57■□□□□ 0.24
LIMCH1-213ENST00000511496 RSF1Q96T23 1441 aaPredicted RBP16.56■□□□□ 0.24
LIMCH1-213ENST00000511496 NPM2Q86SE8 214 aaKnown RBP16.52■□□□□ 0.24
LIMCH1-213ENST00000511496 DAXXQ9UER7 740 aaPredicted RBP16.52■□□□□ 0.24
LIMCH1-213ENST00000511496 WASHC2AQ641Q2 1341 aa16.52■□□□□ 0.23
LIMCH1-213ENST00000511496 C11orf95C9JLR9 678 aaPredicted RBP16.51■□□□□ 0.23
LIMCH1-213ENST00000511496 RSPH6AQ9H0K4 717 aa16.5■□□□□ 0.23
LIMCH1-213ENST00000511496 CCER2I3L3R5 266 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms