Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC16.69■□□□□ 0.26
HMGB1P09429 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 OR8T1P-201ENST00000421347 918 ntBASIC16.69■□□□□ 0.26
HMGB1P09429 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC16.69■□□□□ 0.26
HMGB1P09429 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC16.69■□□□□ 0.26
HMGB1P09429 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC16.69■□□□□ 0.26
HMGB1P09429 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.69■□□□□ 0.26
HMGB1P09429 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC16.69■□□□□ 0.26
HMGB1P09429 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC16.69■□□□□ 0.26
HMGB1P09429 AC244452.3-201ENST00000636814 210 ntBASIC16.69■□□□□ 0.26
HMGB1P09429 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC16.69■□□□□ 0.26
HMGB1P09429 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC16.69■□□□□ 0.26
HMGB1P09429 FMO6P-201ENST00000236166 1620 ntBASIC16.69■□□□□ 0.26
HMGB1P09429 AL359845.1-201ENST00000458202 1648 ntBASIC16.69■□□□□ 0.26
HMGB1P09429 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
HMGB1P09429 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 DNAJC11-202ENST00000377577 3311 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC16.69■□□□□ 0.26
HMGB1P09429 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HMGB1P09429 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HMGB1P09429 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
HMGB1P09429 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC16.68■□□□□ 0.26
HMGB1P09429 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC16.68■□□□□ 0.26
HMGB1P09429 AC005740.1-201ENST00000515639 522 ntBASIC16.68■□□□□ 0.26
HMGB1P09429 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.68■□□□□ 0.26
HMGB1P09429 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.68■□□□□ 0.26
HMGB1P09429 AC090857.1-201ENST00000527400 390 ntBASIC16.68■□□□□ 0.26
HMGB1P09429 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC16.68■□□□□ 0.26
HMGB1P09429 JPT2-214ENST00000569765 782 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 ELP5-212ENST00000574255 671 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC16.68■□□□□ 0.26
HMGB1P09429 AL139424.3-202ENST00000641619 917 ntBASIC16.68■□□□□ 0.26
HMGB1P09429 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
HMGB1P09429 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB1P09429 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC16.68■□□□□ 0.26
HMGB1P09429 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB1P09429 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB1P09429 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGB1P09429 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
HMGB1P09429 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms