Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC14.46□□□□□ -0.1
TRIM55Q9BYV6 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
TRIM55Q9BYV6 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
TRIM55Q9BYV6 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.1
TRIM55Q9BYV6 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
TRIM55Q9BYV6 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
TRIM55Q9BYV6 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 TPI1-206ENST00000488464 791 ntTSL 5 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 C2orf69P2-201ENST00000562032 1123 ntBASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 IGHV3OR16-16-201ENST00000563644 343 ntBASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 AC091271.1-201ENST00000611877 1162 ntBASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 AL603764.1-201ENST00000636452 321 ntBASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 AL118506.1-201ENST00000601296 3082 ntBASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM55Q9BYV6 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 AL139385.1-201ENST00000611744 3272 ntBASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 GPAA1P2-201ENST00000417923 928 ntBASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 GOLGA2P4-201ENST00000441462 777 ntBASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 AC103988.2-201ENST00000561804 725 ntBASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 DUX4L45-201ENST00000566406 1057 ntBASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM55Q9BYV6 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms