Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC14.7□□□□□ -0.06
PTPN9P43378 SNORA50C-201ENST00000408535 133 ntBASIC14.7□□□□□ -0.06
PTPN9P43378 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC14.7□□□□□ -0.06
PTPN9P43378 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC14.7□□□□□ -0.06
PTPN9P43378 PDIA3P2-201ENST00000428073 158 ntBASIC14.7□□□□□ -0.06
PTPN9P43378 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC14.7□□□□□ -0.06
PTPN9P43378 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC14.7□□□□□ -0.06
PTPN9P43378 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC14.7□□□□□ -0.06
PTPN9P43378 RN7SL258P-201ENST00000478664 300 ntBASIC14.7□□□□□ -0.06
PTPN9P43378 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC14.7□□□□□ -0.06
PTPN9P43378 SLC25A15P3-201ENST00000505530 290 ntBASIC14.7□□□□□ -0.06
PTPN9P43378 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PTPN9P43378 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
PTPN9P43378 CENPX-208ENST00000584347 799 ntTSL 2 BASIC14.7□□□□□ -0.06
PTPN9P43378 AL021707.6-201ENST00000609212 491 ntBASIC14.7□□□□□ -0.06
PTPN9P43378 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.7□□□□□ -0.06
PTPN9P43378 SNORA50.1-201ENST00000628590 135 ntBASIC14.7□□□□□ -0.06
PTPN9P43378 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC14.7□□□□□ -0.06
PTPN9P43378 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
PTPN9P43378 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.7□□□□□ -0.06
PTPN9P43378 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
PTPN9P43378 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
PTPN9P43378 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
PTPN9P43378 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.7□□□□□ -0.06
PTPN9P43378 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.69□□□□□ -0.06
PTPN9P43378 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 STK3-218ENST00000617590 2485 ntTSL 5 BASIC14.69□□□□□ -0.06
PTPN9P43378 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
PTPN9P43378 AC093462.1-201ENST00000621167 1683 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
PTPN9P43378 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.69□□□□□ -0.06
PTPN9P43378 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 AC073869.2-201ENST00000417338 1026 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 PPP1R2P4-201ENST00000424051 595 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 AC005077.2-201ENST00000449786 690 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 AC114947.1-202ENST00000514136 344 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 ADM-202ENST00000524948 584 ntTSL 2 BASIC14.69□□□□□ -0.06
PTPN9P43378 ACTG1P17-201ENST00000558391 1119 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 MIR4754-201ENST00000582477 89 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 AC103810.3-201ENST00000583567 96 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
PTPN9P43378 AL133467.4-201ENST00000602953 725 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 AL109837.1-201ENST00000603272 613 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
PTPN9P43378 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC14.69□□□□□ -0.06
PTPN9P43378 AL139424.3-202ENST00000641619 917 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
PTPN9P43378 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC14.69□□□□□ -0.06
PTPN9P43378 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
PTPN9P43378 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 ABCD1P2-201ENST00000429313 1601 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC14.69□□□□□ -0.06
PTPN9P43378 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.69□□□□□ -0.06
PTPN9P43378 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.69□□□□□ -0.06
PTPN9P43378 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 KRT8P43-201ENST00000406052 1458 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 AC004554.1-201ENST00000422830 1468 ntBASIC14.69□□□□□ -0.06
PTPN9P43378 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC14.69□□□□□ -0.06
PTPN9P43378 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC14.69□□□□□ -0.06
PTPN9P43378 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC14.69□□□□□ -0.06
PTPN9P43378 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN9P43378 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
PTPN9P43378 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms