Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
KIAA1549Q9HCM3 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
KIAA1549Q9HCM3 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 RPS23-207ENST00000511844 530 ntTSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 AC135782.3-201ENST00000562782 2105 ntBASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 AC006158.1-201ENST00000610661 249 ntBASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 AL118522.1-201ENST00000611368 560 ntBASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 ST5-261ENST00000626808 1071 ntTSL 5 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 AC072061.1-201ENST00000569710 2234 ntBASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 BAX-205ENST00000391871 687 ntTSL 5 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 DBP-202ENST00000593500 712 ntTSL 2 BASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 AC091769.1-201ENST00000619576 568 ntBASIC12.49□□□□□ -0.41
KIAA1549Q9HCM3 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 RCC2P5-201ENST00000492126 1487 ntBASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 BEND3P1-201ENST00000421591 1944 ntBASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 STK3-218ENST00000617590 2485 ntTSL 5 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 AC008620.2-201ENST00000510294 1569 ntBASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 PPIA-208ENST00000489459 907 ntTSL 2 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 PGAM1P12-201ENST00000505622 748 ntBASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 AC145285.5-201ENST00000562217 361 ntBASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 RN7SL357P-201ENST00000581065 298 ntBASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 PPIA-210ENST00000620047 827 ntTSL 5 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 HLA-C-210ENST00000640219 976 ntBASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 F11R-206ENST00000621309 4770 ntTSL 5 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms