Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC087072.1-201ENST00000603727 421 ntBASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 TUBB4AP1-201ENST00000450755 1325 ntBASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC88AQ3V6T2 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 TBC1D27-202ENST00000424239 1573 ntBASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 HSPA7-201ENST00000445535 1927 ntBASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 OR7E12P-201ENST00000344740 973 ntBASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 MIR632-201ENST00000385193 94 ntBASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 GRAMD4P6-201ENST00000556999 244 ntBASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 AC139100.2-201ENST00000616901 662 ntBASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 AC005865.2-202ENST00000635814 725 ntBASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 AL139424.3-202ENST00000641619 917 ntBASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC88AQ3V6T2 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 TCAM1P-207ENST00000485295 1537 ntBASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms