Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP98P52948 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP98P52948 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC17.14■□□□□ 0.33
NUP98P52948 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP98P52948 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP98P52948 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP98P52948 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC17.14■□□□□ 0.33
NUP98P52948 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC17.14■□□□□ 0.33
NUP98P52948 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
NUP98P52948 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP98P52948 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.14■□□□□ 0.33
NUP98P52948 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP98P52948 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC17.14■□□□□ 0.33
NUP98P52948 U73169.1-201ENST00000395152 367 ntBASIC17.14■□□□□ 0.33
NUP98P52948 CFL1P6-201ENST00000400899 494 ntBASIC17.14■□□□□ 0.33
NUP98P52948 SNORD23-201ENST00000408876 110 ntBASIC17.14■□□□□ 0.33
NUP98P52948 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC17.14■□□□□ 0.33
NUP98P52948 RNU1-80P-201ENST00000459500 161 ntBASIC17.14■□□□□ 0.33
NUP98P52948 ARHGEF26-AS1-203ENST00000480639 582 ntTSL 2 BASIC17.14■□□□□ 0.33
NUP98P52948 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC17.14■□□□□ 0.33
NUP98P52948 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC17.14■□□□□ 0.33
NUP98P52948 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
NUP98P52948 KRT18P8-201ENST00000581937 1246 ntBASIC17.14■□□□□ 0.33
NUP98P52948 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NUP98P52948 AC245369.7-201ENST00000631386 350 ntBASIC17.14■□□□□ 0.33
NUP98P52948 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC17.14■□□□□ 0.33
NUP98P52948 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP98P52948 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP98P52948 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC17.14■□□□□ 0.33
NUP98P52948 FAM45BP-202ENST00000592932 1624 ntBASIC17.14■□□□□ 0.33
NUP98P52948 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC17.13■□□□□ 0.33
NUP98P52948 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
NUP98P52948 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
NUP98P52948 ERG-211ENST00000453032 1595 ntTSL 2 BASIC17.13■□□□□ 0.33
NUP98P52948 AC005089.1-201ENST00000619486 2241 ntBASIC17.13■□□□□ 0.33
NUP98P52948 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 HNRNPA1P10-201ENST00000444945 962 ntBASIC17.13■□□□□ 0.33
NUP98P52948 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC17.13■□□□□ 0.33
NUP98P52948 NDUFB2P1-201ENST00000506966 295 ntBASIC17.13■□□□□ 0.33
NUP98P52948 AC091304.3-201ENST00000566500 716 ntBASIC17.13■□□□□ 0.33
NUP98P52948 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC17.13■□□□□ 0.33
NUP98P52948 AC137723.2-201ENST00000623540 398 ntBASIC17.13■□□□□ 0.33
NUP98P52948 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC17.13■□□□□ 0.33
NUP98P52948 OR6D1P-202ENST00000641007 5290 ntBASIC17.13■□□□□ 0.33
NUP98P52948 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
NUP98P52948 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC17.13■□□□□ 0.33
NUP98P52948 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC17.13■□□□□ 0.33
NUP98P52948 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP98P52948 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC17.12■□□□□ 0.33
NUP98P52948 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
NUP98P52948 RN7SL605P-201ENST00000577229 281 ntBASIC17.12■□□□□ 0.33
NUP98P52948 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC17.12■□□□□ 0.33
NUP98P52948 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC17.12■□□□□ 0.33
NUP98P52948 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
NUP98P52948 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
NUP98P52948 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC17.12■□□□□ 0.33
NUP98P52948 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.12■□□□□ 0.33
NUP98P52948 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC17.12■□□□□ 0.33
NUP98P52948 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC17.12■□□□□ 0.33
NUP98P52948 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC17.12■□□□□ 0.33
NUP98P52948 AC015818.1-201ENST00000451011 244 ntBASIC17.12■□□□□ 0.33
NUP98P52948 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
NUP98P52948 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC17.12■□□□□ 0.33
NUP98P52948 AC005746.3-201ENST00000614751 393 ntBASIC17.12■□□□□ 0.33
NUP98P52948 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC17.12■□□□□ 0.33
NUP98P52948 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP98P52948 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NUP98P52948 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NUP98P52948 PTN-202ENST00000393083 1599 ntTSL 5 BASIC17.11■□□□□ 0.33
NUP98P52948 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
NUP98P52948 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
NUP98P52948 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NUP98P52948 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms