Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
CDX1P47902 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
CDX1P47902 PFKM-201ENST00000312352 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC11.75□□□□□ -0.53
CDX1P47902 SLC1A2-208ENST00000606205 1890 ntTSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
CDX1P47902 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 TPO-206ENST00000382269 1155 ntTSL 5 BASIC11.75□□□□□ -0.53
CDX1P47902 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC11.75□□□□□ -0.53
CDX1P47902 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC11.75□□□□□ -0.53
CDX1P47902 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC11.75□□□□□ -0.53
CDX1P47902 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 HLA-K-203ENST00000430151 1046 ntBASIC11.75□□□□□ -0.53
CDX1P47902 AL355994.2-201ENST00000447882 704 ntBASIC11.75□□□□□ -0.53
CDX1P47902 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC11.75□□□□□ -0.53
CDX1P47902 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC11.75□□□□□ -0.53
CDX1P47902 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC11.75□□□□□ -0.53
CDX1P47902 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 AL033527.4-201ENST00000641026 673 ntBASIC11.75□□□□□ -0.53
CDX1P47902 RHPN1-AS1-201ENST00000518049 1918 ntBASIC11.75□□□□□ -0.53
CDX1P47902 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC11.75□□□□□ -0.53
CDX1P47902 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 VSTM2A-201ENST00000302287 3401 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC11.75□□□□□ -0.53
CDX1P47902 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
CDX1P47902 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC11.75□□□□□ -0.53
CDX1P47902 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
CDX1P47902 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 CETP-203ENST00000566128 1733 ntTSL 5 BASIC11.74□□□□□ -0.53
CDX1P47902 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CDX1P47902 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CDX1P47902 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
CDX1P47902 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC11.74□□□□□ -0.53
CDX1P47902 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC11.74□□□□□ -0.53
CDX1P47902 TMEM233-201ENST00000426426 3081 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CDX1P47902 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 EPS15L1-202ENST00000455140 3266 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CDX1P47902 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC11.74□□□□□ -0.53
CDX1P47902 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
CDX1P47902 MIR1202-201ENST00000408529 83 ntBASIC11.74□□□□□ -0.53
CDX1P47902 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC11.74□□□□□ -0.53
CDX1P47902 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
CDX1P47902 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC11.74□□□□□ -0.53
CDX1P47902 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC11.74□□□□□ -0.53
CDX1P47902 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC11.74□□□□□ -0.53
CDX1P47902 MIR6799-201ENST00000620297 69 ntBASIC11.74□□□□□ -0.53
CDX1P47902 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
CDX1P47902 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC11.74□□□□□ -0.53
CDX1P47902 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC11.74□□□□□ -0.53
CDX1P47902 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC11.74□□□□□ -0.53
CDX1P47902 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 AL354989.2-201ENST00000435838 1540 ntBASIC11.74□□□□□ -0.53
CDX1P47902 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC11.74□□□□□ -0.53
CDX1P47902 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 AL031714.1-202ENST00000568106 3107 ntTSL 5 BASIC11.74□□□□□ -0.53
CDX1P47902 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms