Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC15.23■□□□□ 0.03
CNTN3Q9P232 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC15.23■□□□□ 0.03
CNTN3Q9P232 AC135983.4-201ENST00000564116 1262 ntBASIC15.23■□□□□ 0.03
CNTN3Q9P232 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC15.23■□□□□ 0.03
CNTN3Q9P232 AC244517.3-201ENST00000616254 1235 ntBASIC15.23■□□□□ 0.03
CNTN3Q9P232 AC005618.3-201ENST00000624928 458 ntBASIC15.23■□□□□ 0.03
CNTN3Q9P232 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC15.23■□□□□ 0.03
CNTN3Q9P232 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
CNTN3Q9P232 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CNTN3Q9P232 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CNTN3Q9P232 FTX-216ENST00000638985 1367 ntTSL 5 BASIC15.23■□□□□ 0.03
CNTN3Q9P232 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 TMCO5B-205ENST00000530020 894 ntBASIC15.22■□□□□ 0.03
CNTN3Q9P232 AP000911.2-201ENST00000534330 502 ntBASIC15.22■□□□□ 0.03
CNTN3Q9P232 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 HERC2P11-201ENST00000562845 725 ntBASIC15.22■□□□□ 0.03
CNTN3Q9P232 AC100756.2-201ENST00000569537 736 ntBASIC15.22■□□□□ 0.03
CNTN3Q9P232 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.22■□□□□ 0.03
CNTN3Q9P232 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CNTN3Q9P232 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNTN3Q9P232 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNTN3Q9P232 AC004554.1-201ENST00000422830 1468 ntBASIC15.21■□□□□ 0.03
CNTN3Q9P232 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNTN3Q9P232 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNTN3Q9P232 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNTN3Q9P232 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNTN3Q9P232 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNTN3Q9P232 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNTN3Q9P232 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNTN3Q9P232 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CNTN3Q9P232 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CNTN3Q9P232 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CNTN3Q9P232 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 NEU3-207ENST00000534628 746 ntTSL 2 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CNTN3Q9P232 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms