Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 DEGS1-202ENST00000391877 1345 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 MAL-202ENST00000349807 705 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 NANOS3-202ENST00000397555 769 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 Z84721.1-201ENST00000438841 372 ntBASIC13.61□□□□□ -0.23
VPS13AQ96RL7 AC112250.1-201ENST00000504640 745 ntBASIC13.61□□□□□ -0.23
VPS13AQ96RL7 KCNE3-202ENST00000525550 935 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 AL031768.1-201ENST00000606542 701 ntBASIC13.61□□□□□ -0.23
VPS13AQ96RL7 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 AC068760.1-201ENST00000493579 1953 ntBASIC13.61□□□□□ -0.23
VPS13AQ96RL7 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 AC006504.5-210ENST00000585827 539 ntTSL 4 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 Metazoa_SRP.8-201ENST00000398067 251 ntBASIC13.61□□□□□ -0.23
VPS13AQ96RL7 AL121994.1-201ENST00000413189 402 ntBASIC13.61□□□□□ -0.23
VPS13AQ96RL7 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC13.61□□□□□ -0.23
VPS13AQ96RL7 MIR4309-201ENST00000582498 83 ntBASIC13.61□□□□□ -0.23
VPS13AQ96RL7 AL031673.1-201ENST00000611460 466 ntBASIC13.61□□□□□ -0.23
VPS13AQ96RL7 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 GYG2-204ENST00000381163 3393 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 AC106872.9-201ENST00000512437 1393 ntBASIC13.6□□□□□ -0.23
VPS13AQ96RL7 AC106881.1-201ENST00000605849 3329 ntBASIC13.6□□□□□ -0.23
VPS13AQ96RL7 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 IGFL1-201ENST00000437936 769 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 AC008267.3-201ENST00000448776 712 ntBASIC13.6□□□□□ -0.23
VPS13AQ96RL7 AC079340.2-201ENST00000504957 495 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 AL353708.1-201ENST00000567904 1257 ntBASIC13.6□□□□□ -0.23
VPS13AQ96RL7 MIR663AHG-218ENST00000598448 804 ntTSL 5 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 AC026691.1-201ENST00000602502 2017 ntBASIC13.6□□□□□ -0.23
VPS13AQ96RL7 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 AC104581.4-201ENST00000623126 3052 ntBASIC13.6□□□□□ -0.23
VPS13AQ96RL7 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 SPINK2-201ENST00000248701 613 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 SLC2A11-208ENST00000405847 730 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 AC015818.1-201ENST00000451011 244 ntBASIC13.6□□□□□ -0.23
VPS13AQ96RL7 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 PDPN-208ENST00000509009 571 ntTSL 4 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms