Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
NKX2-1P43699 Z98257.2-202ENST00000641138 1548 ntBASIC11.76□□□□□ -0.53
NKX2-1P43699 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 LINC00869-206ENST00000610578 5734 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 FBLN2-207ENST00000492059 4193 ntAPPRIS P4 TSL 2 BASIC11.75□□□□□ -0.53
NKX2-1P43699 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC11.75□□□□□ -0.53
NKX2-1P43699 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC11.75□□□□□ -0.53
NKX2-1P43699 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 NLRC3-202ENST00000359128 6401 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC11.75□□□□□ -0.53
NKX2-1P43699 AC010970.1-201ENST00000445125 1848 ntBASIC11.75□□□□□ -0.53
NKX2-1P43699 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
NKX2-1P43699 IRAK1BP1-201ENST00000369940 5656 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
NKX2-1P43699 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 ACTBP8-201ENST00000403258 1108 ntBASIC11.75□□□□□ -0.53
NKX2-1P43699 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC11.75□□□□□ -0.53
NKX2-1P43699 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 PUDPP3-201ENST00000445368 636 ntBASIC11.75□□□□□ -0.53
NKX2-1P43699 ALG3P1-201ENST00000508806 1114 ntBASIC11.75□□□□□ -0.53
NKX2-1P43699 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC11.75□□□□□ -0.53
NKX2-1P43699 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC11.75□□□□□ -0.53
NKX2-1P43699 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC11.75□□□□□ -0.53
NKX2-1P43699 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC11.75□□□□□ -0.53
NKX2-1P43699 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC11.75□□□□□ -0.53
NKX2-1P43699 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 PIK3R1-213ENST00000521657 3891 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
NKX2-1P43699 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC11.75□□□□□ -0.53
NKX2-1P43699 KRT18P28-201ENST00000453838 1332 ntBASIC11.75□□□□□ -0.53
NKX2-1P43699 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC11.75□□□□□ -0.53
NKX2-1P43699 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC11.75□□□□□ -0.53
NKX2-1P43699 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC11.75□□□□□ -0.53
NKX2-1P43699 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
NKX2-1P43699 AC100757.3-201ENST00000622361 1406 ntBASIC11.75□□□□□ -0.53
NKX2-1P43699 ABCA3-202ENST00000382381 6446 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC11.75□□□□□ -0.53
NKX2-1P43699 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC11.75□□□□□ -0.53
NKX2-1P43699 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC11.75□□□□□ -0.53
NKX2-1P43699 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC11.75□□□□□ -0.53
NKX2-1P43699 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC11.75□□□□□ -0.53
NKX2-1P43699 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC11.75□□□□□ -0.53
NKX2-1P43699 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
NKX2-1P43699 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
NKX2-1P43699 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
NKX2-1P43699 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC11.74□□□□□ -0.53
NKX2-1P43699 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 CCDC88C-204ENST00000389857 7474 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
NKX2-1P43699 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC11.74□□□□□ -0.53
NKX2-1P43699 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 DYSF-206ENST00000409744 6564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 DYSF-209ENST00000410041 6594 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC11.74□□□□□ -0.53
NKX2-1P43699 PON3-203ENST00000427422 894 ntTSL 3 BASIC11.74□□□□□ -0.53
NKX2-1P43699 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC11.74□□□□□ -0.53
NKX2-1P43699 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC11.74□□□□□ -0.53
NKX2-1P43699 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC11.74□□□□□ -0.53
NKX2-1P43699 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC11.74□□□□□ -0.53
NKX2-1P43699 SPDYE18-201ENST00000510091 1050 ntBASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms