Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 AP000344.2-201ENST00000512987 629 ntBASIC10.13□□□□□ -0.79
CKS1BP61024 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC10.13□□□□□ -0.79
CKS1BP61024 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC10.13□□□□□ -0.79
CKS1BP61024 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC10.13□□□□□ -0.79
CKS1BP61024 TIMM17BP1-201ENST00000545713 516 ntBASIC10.13□□□□□ -0.79
CKS1BP61024 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC10.13□□□□□ -0.79
CKS1BP61024 MIR3687-2-201ENST00000577708 61 ntBASIC10.13□□□□□ -0.79
CKS1BP61024 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC10.13□□□□□ -0.79
CKS1BP61024 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
CKS1BP61024 AC074044.1-201ENST00000609673 707 ntBASIC10.13□□□□□ -0.79
CKS1BP61024 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC10.13□□□□□ -0.79
CKS1BP61024 MIR3687-1-201ENST00000614492 61 ntBASIC10.13□□□□□ -0.79
CKS1BP61024 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC10.13□□□□□ -0.79
CKS1BP61024 NME4-212ENST00000621774 904 ntTSL 3 BASIC10.13□□□□□ -0.79
CKS1BP61024 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC10.13□□□□□ -0.79
CKS1BP61024 FREM3-201ENST00000329798 6729 ntAPPRIS P1 TSL 5 BASIC10.13□□□□□ -0.79
CKS1BP61024 IPO7-201ENST00000379719 6191 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
CKS1BP61024 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC10.13□□□□□ -0.79
CKS1BP61024 TUBGCP2-201ENST00000252936 3885 ntAPPRIS P1 TSL 2 BASIC10.13□□□□□ -0.79
CKS1BP61024 ATXN10-201ENST00000252934 3329 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
CKS1BP61024 AC018445.4-201ENST00000624066 2291 ntBASIC10.13□□□□□ -0.79
CKS1BP61024 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC10.13□□□□□ -0.79
CKS1BP61024 FER1L5-206ENST00000624922 6367 ntAPPRIS P2 TSL 5 BASIC10.13□□□□□ -0.79
CKS1BP61024 LINC01993-201ENST00000374945 2934 ntTSL 2 BASIC10.13□□□□□ -0.79
CKS1BP61024 HERC2P9-203ENST00000528584 2947 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
CKS1BP61024 CTCFL-217ENST00000608425 2915 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
CKS1BP61024 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC10.13□□□□□ -0.79
CKS1BP61024 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC10.13□□□□□ -0.79
CKS1BP61024 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
CKS1BP61024 POLR2J4-202ENST00000427076 6466 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
CKS1BP61024 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 ATG13-211ENST00000528494 2351 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 NRAP-201ENST00000359988 5580 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 SEMA3F-206ENST00000434342 3541 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 SLC22A6-202ENST00000377871 2151 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 WDR27-203ENST00000448612 3178 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 TOLLIP-207ENST00000527886 3666 ntTSL 2 BASIC10.12□□□□□ -0.79
CKS1BP61024 AMPD2-203ENST00000358729 2838 ntTSL 2 BASIC10.12□□□□□ -0.79
CKS1BP61024 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC10.12□□□□□ -0.79
CKS1BP61024 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 RSPO2-201ENST00000276659 3111 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC10.12□□□□□ -0.79
CKS1BP61024 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 SLC47A1-201ENST00000270570 3280 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
CKS1BP61024 RNF219-AS1-209ENST00000606429 2418 ntTSL 2 BASIC10.12□□□□□ -0.79
CKS1BP61024 TNS2-210ENST00000549700 4525 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
CKS1BP61024 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC10.12□□□□□ -0.79
CKS1BP61024 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC10.12□□□□□ -0.79
CKS1BP61024 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 AP001267.2-201ENST00000532619 2086 ntBASIC10.12□□□□□ -0.79
CKS1BP61024 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC10.12□□□□□ -0.79
CKS1BP61024 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 PKIG-203ENST00000372887 769 ntTSL 3 BASIC10.12□□□□□ -0.79
CKS1BP61024 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC10.12□□□□□ -0.79
CKS1BP61024 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC10.12□□□□□ -0.79
CKS1BP61024 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC10.12□□□□□ -0.79
CKS1BP61024 KRT18P64-201ENST00000434946 1219 ntBASIC10.12□□□□□ -0.79
CKS1BP61024 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC10.12□□□□□ -0.79
CKS1BP61024 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 SPDYE14P-201ENST00000442619 822 ntBASIC10.12□□□□□ -0.79
CKS1BP61024 RN7SL618P-201ENST00000477850 296 ntBASIC10.12□□□□□ -0.79
CKS1BP61024 AC022447.6-201ENST00000515522 438 ntBASIC10.12□□□□□ -0.79
CKS1BP61024 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC10.12□□□□□ -0.79
CKS1BP61024 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC10.12□□□□□ -0.79
CKS1BP61024 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC10.12□□□□□ -0.79
CKS1BP61024 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC10.12□□□□□ -0.79
CKS1BP61024 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 AC025048.3-201ENST00000590609 569 ntBASIC10.12□□□□□ -0.79
CKS1BP61024 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC10.12□□□□□ -0.79
CKS1BP61024 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC10.12□□□□□ -0.79
CKS1BP61024 AC005702.4-201ENST00000618393 416 ntBASIC10.12□□□□□ -0.79
CKS1BP61024 AL513210.1-201ENST00000629608 234 ntBASIC10.12□□□□□ -0.79
CKS1BP61024 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC10.12□□□□□ -0.79
CKS1BP61024 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC10.12□□□□□ -0.79
CKS1BP61024 AF228730.6-201ENST00000641497 218 ntBASIC10.12□□□□□ -0.79
CKS1BP61024 AC084121.3-201ENST00000641716 218 ntBASIC10.12□□□□□ -0.79
CKS1BP61024 ERCC5-201ENST00000355739 5082 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC10.12□□□□□ -0.79
CKS1BP61024 GRPEL2-201ENST00000329271 4089 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 TXNRD1-201ENST00000354940 4082 ntAPPRIS ALT1 TSL 5 BASIC10.12□□□□□ -0.79
CKS1BP61024 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC10.12□□□□□ -0.79
CKS1BP61024 VSTM4-202ENST00000332853 6392 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 PTPN1-201ENST00000371621 4008 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
CKS1BP61024 PBX1-203ENST00000420696 6636 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms