Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DOAP06340 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DOAP06340 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DOAP06340 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DOAP06340 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 CYP51A1P3-201ENST00000400072 1428 ntBASIC16.72■□□□□ 0.27
HLA-DOAP06340 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 DUT-208ENST00000559540 1441 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 AC012617.1-204ENST00000586340 2305 ntBASIC16.72■□□□□ 0.27
HLA-DOAP06340 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 SNORD3B-1-201ENST00000577988 758 ntBASIC16.72■□□□□ 0.27
HLA-DOAP06340 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 KRT8P43-201ENST00000406052 1458 ntBASIC16.72■□□□□ 0.27
HLA-DOAP06340 AC004554.1-201ENST00000422830 1468 ntBASIC16.72■□□□□ 0.27
HLA-DOAP06340 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC16.72■□□□□ 0.27
HLA-DOAP06340 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DOAP06340 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 USP39-220ENST00000613444 2161 ntTSL 2 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 BAK1P1-201ENST00000317045 636 ntBASIC16.71■□□□□ 0.27
HLA-DOAP06340 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 ST5-261ENST00000626808 1071 ntTSL 5 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 AL139158.3-201ENST00000641212 1562 ntBASIC16.71■□□□□ 0.27
HLA-DOAP06340 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DOAP06340 NIN-202ENST00000324330 4364 ntTSL 5 BASIC16.71■□□□□ 0.27
HLA-DOAP06340 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
HLA-DOAP06340 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
HLA-DOAP06340 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HLA-DOAP06340 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
HLA-DOAP06340 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HLA-DOAP06340 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
HLA-DOAP06340 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC16.71■□□□□ 0.26
HLA-DOAP06340 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 ODCP-201ENST00000459650 1639 ntBASIC16.7■□□□□ 0.26
HLA-DOAP06340 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DOAP06340 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DOAP06340 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms