Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
APOEP02649 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC15.02■□□□□ -0
APOEP02649 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.02■□□□□ -0
APOEP02649 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC15.02■□□□□ -0
APOEP02649 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
APOEP02649 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
APOEP02649 TUBBP5-203ENST00000508529 1334 ntBASIC15.02■□□□□ -0
APOEP02649 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC15.02■□□□□ -0
APOEP02649 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC15.02■□□□□ -0
APOEP02649 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
APOEP02649 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC15.02■□□□□ -0
APOEP02649 SDCCAG3P2-201ENST00000326105 1023 ntBASIC15.02■□□□□ -0
APOEP02649 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC15.02■□□□□ -0
APOEP02649 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.02■□□□□ -0
APOEP02649 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC15.02■□□□□ -0
APOEP02649 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
APOEP02649 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.02■□□□□ -0
APOEP02649 AC090857.1-201ENST00000527400 390 ntBASIC15.02■□□□□ -0
APOEP02649 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC15.02■□□□□ -0
APOEP02649 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC15.02■□□□□ -0
APOEP02649 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC15.02■□□□□ -0
APOEP02649 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
APOEP02649 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
APOEP02649 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
APOEP02649 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
APOEP02649 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
APOEP02649 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
APOEP02649 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC15.02□□□□□ -0.01
APOEP02649 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.02□□□□□ -0.01
APOEP02649 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
APOEP02649 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.02□□□□□ -0.01
APOEP02649 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
APOEP02649 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
APOEP02649 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
APOEP02649 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
APOEP02649 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
APOEP02649 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC15.02□□□□□ -0.01
APOEP02649 AL133338.1-201ENST00000565695 1517 ntBASIC15.02□□□□□ -0.01
APOEP02649 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
APOEP02649 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC15.02□□□□□ -0.01
APOEP02649 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
APOEP02649 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC15.01□□□□□ -0.01
APOEP02649 LAP3P2-201ENST00000454686 1454 ntBASIC15.01□□□□□ -0.01
APOEP02649 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.01□□□□□ -0.01
APOEP02649 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC15.01□□□□□ -0.01
APOEP02649 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
APOEP02649 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC15.01□□□□□ -0.01
APOEP02649 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.01□□□□□ -0.01
APOEP02649 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC15.01□□□□□ -0.01
APOEP02649 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC15.01□□□□□ -0.01
APOEP02649 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC15.01□□□□□ -0.01
APOEP02649 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
APOEP02649 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC15.01□□□□□ -0.01
APOEP02649 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC15.01□□□□□ -0.01
APOEP02649 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC15.01□□□□□ -0.01
APOEP02649 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.01□□□□□ -0.01
APOEP02649 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
APOEP02649 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
APOEP02649 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
APOEP02649 AC104506.1-201ENST00000609247 429 ntBASIC15.01□□□□□ -0.01
APOEP02649 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC15.01□□□□□ -0.01
APOEP02649 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC15.01□□□□□ -0.01
APOEP02649 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
APOEP02649 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
APOEP02649 KRT8P24-201ENST00000560290 1559 ntBASIC15.01□□□□□ -0.01
APOEP02649 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
APOEP02649 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.01□□□□□ -0.01
APOEP02649 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC15.01□□□□□ -0.01
APOEP02649 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 KRT8P21-201ENST00000430398 1491 ntBASIC15.01□□□□□ -0.01
APOEP02649 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC15.01□□□□□ -0.01
APOEP02649 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
APOEP02649 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
APOEP02649 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
APOEP02649 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
APOEP02649 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
APOEP02649 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
APOEP02649 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
APOEP02649 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
APOEP02649 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15□□□□□ -0.01
APOEP02649 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
APOEP02649 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
APOEP02649 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms