Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 AC113367.3-201ENST00000508316 1912 ntBASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 AL513477.1-201ENST00000602865 2407 ntBASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 KRT17P5-201ENST00000332088 839 ntBASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 RN7SL81P-201ENST00000493781 261 ntBASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 MIR4649-201ENST00000582839 64 ntBASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 AC009560.1-201ENST00000620208 434 ntBASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 AL596257.1-201ENST00000641463 2694 ntBASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 AC103702.1-201ENST00000548801 2630 ntBASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC3Q9BQI4 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 MYADML-201ENST00000474610 2147 ntBASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 RN7SL277P-201ENST00000481521 288 ntBASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 AC027237.1-201ENST00000560942 655 ntBASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC3Q9BQI4 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC3Q9BQI4 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC3Q9BQI4 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms