Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFSF9P41273 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC15.4■□□□□ 0.06
TNFSF9P41273 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC15.4■□□□□ 0.06
TNFSF9P41273 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TNFSF9P41273 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TNFSF9P41273 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFSF9P41273 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC15.4■□□□□ 0.06
TNFSF9P41273 CMC2-204ENST00000562713 573 ntTSL 3 BASIC15.4■□□□□ 0.06
TNFSF9P41273 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC15.4■□□□□ 0.06
TNFSF9P41273 CMC2-209ENST00000565108 399 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFSF9P41273 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFSF9P41273 MIR4522-201ENST00000584932 87 ntBASIC15.4■□□□□ 0.06
TNFSF9P41273 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFSF9P41273 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TNFSF9P41273 AC009560.1-201ENST00000620208 434 ntBASIC15.4■□□□□ 0.06
TNFSF9P41273 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC15.4■□□□□ 0.06
TNFSF9P41273 CMC2-224ENST00000630396 481 ntTSL 5 BASIC15.4■□□□□ 0.06
TNFSF9P41273 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TNFSF9P41273 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFSF9P41273 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFSF9P41273 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TNFSF9P41273 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TNFSF9P41273 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFSF9P41273 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.4■□□□□ 0.06
TNFSF9P41273 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFSF9P41273 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC15.4■□□□□ 0.06
TNFSF9P41273 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFSF9P41273 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TNFSF9P41273 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFSF9P41273 AL928654.5-201ENST00000624831 2501 ntBASIC15.4■□□□□ 0.06
TNFSF9P41273 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TNFSF9P41273 RPL13AP3-202ENST00000494676 1473 ntBASIC15.4■□□□□ 0.06
TNFSF9P41273 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TNFSF9P41273 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.06
TNFSF9P41273 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
TNFSF9P41273 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC15.39■□□□□ 0.05
TNFSF9P41273 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 AC068760.1-201ENST00000493579 1953 ntBASIC15.39■□□□□ 0.05
TNFSF9P41273 GOLGA8EP-201ENST00000530246 1959 ntBASIC15.39■□□□□ 0.05
TNFSF9P41273 NIN-202ENST00000324330 4364 ntTSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC15.39■□□□□ 0.05
TNFSF9P41273 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC15.39■□□□□ 0.05
TNFSF9P41273 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC15.39■□□□□ 0.05
TNFSF9P41273 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC15.39■□□□□ 0.05
TNFSF9P41273 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC15.39■□□□□ 0.05
TNFSF9P41273 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC15.39■□□□□ 0.05
TNFSF9P41273 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.39■□□□□ 0.05
TNFSF9P41273 CHCHD2P2-201ENST00000503744 321 ntBASIC15.39■□□□□ 0.05
TNFSF9P41273 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC15.39■□□□□ 0.05
TNFSF9P41273 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC15.39■□□□□ 0.05
TNFSF9P41273 NDUFB10P1-201ENST00000567319 521 ntBASIC15.39■□□□□ 0.05
TNFSF9P41273 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC15.39■□□□□ 0.05
TNFSF9P41273 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
TNFSF9P41273 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 AL133467.4-201ENST00000602953 725 ntBASIC15.39■□□□□ 0.05
TNFSF9P41273 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
TNFSF9P41273 TP53-221ENST00000615910 1149 ntTSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC15.39■□□□□ 0.05
TNFSF9P41273 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 SARS-202ENST00000369923 1882 ntTSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
TNFSF9P41273 AC111170.3-201ENST00000624282 2464 ntBASIC15.39■□□□□ 0.05
TNFSF9P41273 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC15.39■□□□□ 0.05
TNFSF9P41273 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TNFSF9P41273 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TNFSF9P41273 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
TNFSF9P41273 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TNFSF9P41273 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TNFSF9P41273 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms