Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
VPS13AQ96RL7 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
VPS13AQ96RL7 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC22.7■■□□□ 1.22
VPS13AQ96RL7 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC22.7■■□□□ 1.22
VPS13AQ96RL7 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
VPS13AQ96RL7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC22.7■■□□□ 1.22
VPS13AQ96RL7 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC22.7■■□□□ 1.22
VPS13AQ96RL7 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC22.69■■□□□ 1.22
VPS13AQ96RL7 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
VPS13AQ96RL7 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
VPS13AQ96RL7 ARL16-209ENST00000573715 763 ntTSL 3 BASIC22.69■■□□□ 1.22
VPS13AQ96RL7 ARL16-211ENST00000576135 694 ntTSL 3 BASIC22.69■■□□□ 1.22
VPS13AQ96RL7 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
VPS13AQ96RL7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
VPS13AQ96RL7 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
VPS13AQ96RL7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC22.69■■□□□ 1.22
VPS13AQ96RL7 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.69■■□□□ 1.22
VPS13AQ96RL7 GUSBP6-202ENST00000438529 1198 ntBASIC22.69■■□□□ 1.22
VPS13AQ96RL7 CD99P1-205ENST00000527459 561 ntBASIC22.69■■□□□ 1.22
VPS13AQ96RL7 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC22.69■■□□□ 1.22
VPS13AQ96RL7 AC126544.1-201ENST00000580842 1059 ntBASIC22.69■■□□□ 1.22
VPS13AQ96RL7 WT1-AS_3.1-201ENST00000613262 234 ntBASIC22.69■■□□□ 1.22
VPS13AQ96RL7 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC22.68■■□□□ 1.22
VPS13AQ96RL7 KRT18P6-201ENST00000555540 1265 ntBASIC22.68■■□□□ 1.22
VPS13AQ96RL7 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
VPS13AQ96RL7 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC22.68■■□□□ 1.22
VPS13AQ96RL7 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC22.68■■□□□ 1.22
VPS13AQ96RL7 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
VPS13AQ96RL7 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
VPS13AQ96RL7 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
VPS13AQ96RL7 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
VPS13AQ96RL7 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC22.67■■□□□ 1.22
VPS13AQ96RL7 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
VPS13AQ96RL7 NT5C3AP1-201ENST00000394500 1012 ntBASIC22.67■■□□□ 1.22
VPS13AQ96RL7 DET1-205ENST00000558413 583 ntTSL 4 BASIC22.67■■□□□ 1.22
VPS13AQ96RL7 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
VPS13AQ96RL7 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC22.66■■□□□ 1.22
VPS13AQ96RL7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC22.66■■□□□ 1.22
VPS13AQ96RL7 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
VPS13AQ96RL7 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS13AQ96RL7 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS13AQ96RL7 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC22.66■■□□□ 1.22
VPS13AQ96RL7 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
VPS13AQ96RL7 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS13AQ96RL7 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.66■■□□□ 1.22
VPS13AQ96RL7 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VPS13AQ96RL7 MIR663A-201ENST00000385250 93 ntBASIC22.65■■□□□ 1.22
VPS13AQ96RL7 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC22.65■■□□□ 1.22
VPS13AQ96RL7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.65■■□□□ 1.22
VPS13AQ96RL7 AL354811.1-201ENST00000610286 706 ntBASIC22.65■■□□□ 1.22
VPS13AQ96RL7 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.65■■□□□ 1.22
VPS13AQ96RL7 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VPS13AQ96RL7 STX7-201ENST00000367937 1090 ntTSL 5 BASIC22.65■■□□□ 1.22
VPS13AQ96RL7 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC22.64■■□□□ 1.22
VPS13AQ96RL7 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
VPS13AQ96RL7 AL109923.1-201ENST00000618799 583 ntBASIC22.64■■□□□ 1.22
VPS13AQ96RL7 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
VPS13AQ96RL7 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
VPS13AQ96RL7 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC22.64■■□□□ 1.22
VPS13AQ96RL7 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
VPS13AQ96RL7 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
VPS13AQ96RL7 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.64■■□□□ 1.21
VPS13AQ96RL7 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
VPS13AQ96RL7 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC22.64■■□□□ 1.21
VPS13AQ96RL7 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
VPS13AQ96RL7 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.64■■□□□ 1.21
VPS13AQ96RL7 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC22.64■■□□□ 1.21
VPS13AQ96RL7 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
VPS13AQ96RL7 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC22.63■■□□□ 1.21
VPS13AQ96RL7 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
VPS13AQ96RL7 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
VPS13AQ96RL7 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VPS13AQ96RL7 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
VPS13AQ96RL7 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
VPS13AQ96RL7 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC22.62■■□□□ 1.21
VPS13AQ96RL7 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
VPS13AQ96RL7 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC22.62■■□□□ 1.21
VPS13AQ96RL7 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
VPS13AQ96RL7 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
VPS13AQ96RL7 MIR572-201ENST00000384983 95 ntBASIC22.62■■□□□ 1.21
VPS13AQ96RL7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC22.62■■□□□ 1.21
VPS13AQ96RL7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.62■■□□□ 1.21
VPS13AQ96RL7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
VPS13AQ96RL7 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC22.62■■□□□ 1.21
VPS13AQ96RL7 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC22.62■■□□□ 1.21
VPS13AQ96RL7 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC22.62■■□□□ 1.21
VPS13AQ96RL7 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.61■■□□□ 1.21
VPS13AQ96RL7 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
VPS13AQ96RL7 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.61■■□□□ 1.21
VPS13AQ96RL7 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
VPS13AQ96RL7 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
VPS13AQ96RL7 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC22.61■■□□□ 1.21
VPS13AQ96RL7 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
VPS13AQ96RL7 WWOX-218ENST00000627394 894 ntTSL 5 BASIC22.61■■□□□ 1.21
VPS13AQ96RL7 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
VPS13AQ96RL7 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC22.61■■□□□ 1.21
VPS13AQ96RL7 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
VPS13AQ96RL7 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC22.6■■□□□ 1.21
VPS13AQ96RL7 AC137761.2-201ENST00000561729 223 ntBASIC22.6■■□□□ 1.21
VPS13AQ96RL7 AC145350.3-201ENST00000569033 163 ntBASIC22.6■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms