Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SMC1BQ8NDV3 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SMC1BQ8NDV3 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SMC1BQ8NDV3 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC27.17■■□□□ 1.94
SMC1BQ8NDV3 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
SMC1BQ8NDV3 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SMC1BQ8NDV3 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC27.17■■□□□ 1.94
SMC1BQ8NDV3 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
SMC1BQ8NDV3 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC27.17■■□□□ 1.94
SMC1BQ8NDV3 NKILA-201ENST00000613231 537 ntTSL 4 BASIC27.17■■□□□ 1.94
SMC1BQ8NDV3 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
SMC1BQ8NDV3 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
SMC1BQ8NDV3 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
SMC1BQ8NDV3 GTSE1-AS1-202ENST00000623117 1518 ntBASIC27.16■■□□□ 1.94
SMC1BQ8NDV3 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SMC1BQ8NDV3 LHPP-203ENST00000392757 840 ntTSL 3 BASIC27.16■■□□□ 1.94
SMC1BQ8NDV3 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC27.16■■□□□ 1.94
SMC1BQ8NDV3 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC27.16■■□□□ 1.94
SMC1BQ8NDV3 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SMC1BQ8NDV3 WWOX-218ENST00000627394 894 ntTSL 5 BASIC27.16■■□□□ 1.94
SMC1BQ8NDV3 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC27.16■■□□□ 1.94
SMC1BQ8NDV3 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SMC1BQ8NDV3 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
SMC1BQ8NDV3 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC27.16■■□□□ 1.94
SMC1BQ8NDV3 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
SMC1BQ8NDV3 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
SMC1BQ8NDV3 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
SMC1BQ8NDV3 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC27.15■■□□□ 1.94
SMC1BQ8NDV3 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC27.15■■□□□ 1.94
SMC1BQ8NDV3 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
SMC1BQ8NDV3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC27.15■■□□□ 1.94
SMC1BQ8NDV3 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SMC1BQ8NDV3 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC27.14■■□□□ 1.94
SMC1BQ8NDV3 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC27.14■■□□□ 1.94
SMC1BQ8NDV3 MIR4651-201ENST00000582622 73 ntBASIC27.14■■□□□ 1.94
SMC1BQ8NDV3 GAMT-205ENST00000640762 751 ntTSL 5 BASIC27.14■■□□□ 1.94
SMC1BQ8NDV3 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SMC1BQ8NDV3 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SMC1BQ8NDV3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
SMC1BQ8NDV3 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC27.13■■□□□ 1.93
SMC1BQ8NDV3 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC27.13■■□□□ 1.93
SMC1BQ8NDV3 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC27.13■■□□□ 1.93
SMC1BQ8NDV3 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SMC1BQ8NDV3 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
SMC1BQ8NDV3 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SMC1BQ8NDV3 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
SMC1BQ8NDV3 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC27.12■■□□□ 1.93
SMC1BQ8NDV3 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC27.12■■□□□ 1.93
SMC1BQ8NDV3 SHD-204ENST00000599689 1729 ntTSL 5 BASIC27.11■■□□□ 1.93
SMC1BQ8NDV3 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC27.11■■□□□ 1.93
SMC1BQ8NDV3 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC27.11■■□□□ 1.93
SMC1BQ8NDV3 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC27.11■■□□□ 1.93
SMC1BQ8NDV3 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMC1BQ8NDV3 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMC1BQ8NDV3 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC27.1■■□□□ 1.93
SMC1BQ8NDV3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SMC1BQ8NDV3 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC27.1■■□□□ 1.93
SMC1BQ8NDV3 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SMC1BQ8NDV3 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC27.1■■□□□ 1.93
SMC1BQ8NDV3 AC008687.6-201ENST00000596318 630 ntBASIC27.1■■□□□ 1.93
SMC1BQ8NDV3 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC27.1■■□□□ 1.93
SMC1BQ8NDV3 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SMC1BQ8NDV3 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SMC1BQ8NDV3 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC27.1■■□□□ 1.93
SMC1BQ8NDV3 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC27.09■■□□□ 1.93
SMC1BQ8NDV3 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC27.09■■□□□ 1.93
SMC1BQ8NDV3 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
SMC1BQ8NDV3 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SMC1BQ8NDV3 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC27.09■■□□□ 1.93
SMC1BQ8NDV3 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC27.09■■□□□ 1.93
SMC1BQ8NDV3 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC27.09■■□□□ 1.93
SMC1BQ8NDV3 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC27.09■■□□□ 1.93
SMC1BQ8NDV3 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC27.09■■□□□ 1.93
SMC1BQ8NDV3 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SMC1BQ8NDV3 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC27.08■■□□□ 1.93
SMC1BQ8NDV3 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SMC1BQ8NDV3 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
SMC1BQ8NDV3 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC27.08■■□□□ 1.93
SMC1BQ8NDV3 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
SMC1BQ8NDV3 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SMC1BQ8NDV3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SMC1BQ8NDV3 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC27.07■■□□□ 1.92
SMC1BQ8NDV3 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
SMC1BQ8NDV3 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC27.07■■□□□ 1.92
SMC1BQ8NDV3 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SMC1BQ8NDV3 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC27.07■■□□□ 1.92
SMC1BQ8NDV3 MDK-213ENST00000617138 635 ntTSL 2 BASIC27.07■■□□□ 1.92
SMC1BQ8NDV3 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC27.07■■□□□ 1.92
SMC1BQ8NDV3 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SMC1BQ8NDV3 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC27.07■■□□□ 1.92
SMC1BQ8NDV3 COX20-201ENST00000366528 568 ntTSL 2 BASIC27.06■■□□□ 1.92
SMC1BQ8NDV3 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
SMC1BQ8NDV3 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SMC1BQ8NDV3 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SMC1BQ8NDV3 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC27.06■■□□□ 1.92
SMC1BQ8NDV3 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC27.06■■□□□ 1.92
SMC1BQ8NDV3 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SMC1BQ8NDV3 KLF13-207ENST00000560473 489 ntTSL 3 BASIC27.06■■□□□ 1.92
SMC1BQ8NDV3 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SMC1BQ8NDV3 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms