Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS1Q01581 AC004448.1-201ENST00000458332 883 ntBASIC21.76■■□□□ 1.07
HMGCS1Q01581 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS1Q01581 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.76■■□□□ 1.07
HMGCS1Q01581 AC103724.3-201ENST00000564481 992 ntBASIC21.76■■□□□ 1.07
HMGCS1Q01581 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
HMGCS1Q01581 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS1Q01581 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS1Q01581 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
HMGCS1Q01581 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.76■■□□□ 1.07
HMGCS1Q01581 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.75■■□□□ 1.07
HMGCS1Q01581 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGCS1Q01581 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGCS1Q01581 YBX1P4-201ENST00000392794 808 ntBASIC21.75■■□□□ 1.07
HMGCS1Q01581 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGCS1Q01581 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
HMGCS1Q01581 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
HMGCS1Q01581 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGCS1Q01581 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGCS1Q01581 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS1Q01581 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS1Q01581 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS1Q01581 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS1Q01581 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS1Q01581 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.74■■□□□ 1.07
HMGCS1Q01581 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS1Q01581 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS1Q01581 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS1Q01581 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS1Q01581 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS1Q01581 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS1Q01581 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
HMGCS1Q01581 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS1Q01581 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.73■■□□□ 1.07
HMGCS1Q01581 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS1Q01581 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
HMGCS1Q01581 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS1Q01581 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS1Q01581 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS1Q01581 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.72■■□□□ 1.07
HMGCS1Q01581 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS1Q01581 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
HMGCS1Q01581 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS1Q01581 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
HMGCS1Q01581 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS1Q01581 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS1Q01581 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
HMGCS1Q01581 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.71■■□□□ 1.07
HMGCS1Q01581 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS1Q01581 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
HMGCS1Q01581 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS1Q01581 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
HMGCS1Q01581 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
HMGCS1Q01581 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.7■■□□□ 1.06
HMGCS1Q01581 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
HMGCS1Q01581 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS1Q01581 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS1Q01581 C1orf229-201ENST00000623686 2258 ntBASIC21.7■■□□□ 1.06
HMGCS1Q01581 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS1Q01581 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS1Q01581 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.7■■□□□ 1.06
HMGCS1Q01581 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.7■■□□□ 1.06
HMGCS1Q01581 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS1Q01581 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS1Q01581 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS1Q01581 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS1Q01581 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGCS1Q01581 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.69■■□□□ 1.06
HMGCS1Q01581 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS1Q01581 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS1Q01581 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS1Q01581 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS1Q01581 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS1Q01581 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS1Q01581 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS1Q01581 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS1Q01581 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS1Q01581 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS1Q01581 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS1Q01581 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.68■■□□□ 1.06
HMGCS1Q01581 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.68■■□□□ 1.06
HMGCS1Q01581 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
HMGCS1Q01581 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS1Q01581 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
HMGCS1Q01581 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS1Q01581 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGCS1Q01581 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGCS1Q01581 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.67■■□□□ 1.06
HMGCS1Q01581 AC079630.1-202ENST00000618127 1840 ntBASIC21.67■■□□□ 1.06
HMGCS1Q01581 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.67■■□□□ 1.06
HMGCS1Q01581 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.67■■□□□ 1.06
HMGCS1Q01581 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
HMGCS1Q01581 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGCS1Q01581 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
HMGCS1Q01581 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS1Q01581 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS1Q01581 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.66■■□□□ 1.06
HMGCS1Q01581 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.66■■□□□ 1.06
HMGCS1Q01581 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.66■■□□□ 1.06
HMGCS1Q01581 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms