Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.27■■□□□ 1
LDB3O75112 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.27■■□□□ 1
LDB3O75112 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.27■■□□□ 1
LDB3O75112 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.27■■□□□ 1
LDB3O75112 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.27■■□□□ 1
LDB3O75112 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
LDB3O75112 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
LDB3O75112 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDB3O75112 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LDB3O75112 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
LDB3O75112 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LDB3O75112 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDB3O75112 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LDB3O75112 AL356740.2-201ENST00000601559 647 ntBASIC21.26■□□□□ 0.99
LDB3O75112 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.26■□□□□ 0.99
LDB3O75112 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.26■□□□□ 0.99
LDB3O75112 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDB3O75112 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.26■□□□□ 0.99
LDB3O75112 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDB3O75112 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LDB3O75112 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LDB3O75112 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.25■□□□□ 0.99
LDB3O75112 MIR3621-201ENST00000580529 85 ntBASIC21.25■□□□□ 0.99
LDB3O75112 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.25■□□□□ 0.99
LDB3O75112 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LDB3O75112 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDB3O75112 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.25■□□□□ 0.99
LDB3O75112 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
LDB3O75112 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDB3O75112 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
LDB3O75112 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LDB3O75112 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDB3O75112 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB3O75112 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB3O75112 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.24■□□□□ 0.99
LDB3O75112 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.24■□□□□ 0.99
LDB3O75112 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB3O75112 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB3O75112 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
LDB3O75112 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB3O75112 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LDB3O75112 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LDB3O75112 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LDB3O75112 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.23■□□□□ 0.99
LDB3O75112 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.23■□□□□ 0.99
LDB3O75112 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.23■□□□□ 0.99
LDB3O75112 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.23■□□□□ 0.99
LDB3O75112 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.23■□□□□ 0.99
LDB3O75112 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LDB3O75112 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LDB3O75112 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB3O75112 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB3O75112 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB3O75112 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB3O75112 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.22■□□□□ 0.99
LDB3O75112 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.22■□□□□ 0.99
LDB3O75112 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.22■□□□□ 0.99
LDB3O75112 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB3O75112 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB3O75112 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB3O75112 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
LDB3O75112 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.22■□□□□ 0.99
LDB3O75112 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB3O75112 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.21■□□□□ 0.99
LDB3O75112 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LDB3O75112 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDB3O75112 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
LDB3O75112 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LDB3O75112 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.21■□□□□ 0.99
LDB3O75112 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDB3O75112 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDB3O75112 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
LDB3O75112 AC009102.2-201ENST00000606772 1639 ntBASIC21.21■□□□□ 0.99
LDB3O75112 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.21■□□□□ 0.99
LDB3O75112 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDB3O75112 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.21■□□□□ 0.99
LDB3O75112 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDB3O75112 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDB3O75112 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDB3O75112 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDB3O75112 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.2■□□□□ 0.98
LDB3O75112 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LDB3O75112 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.2■□□□□ 0.98
LDB3O75112 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.2■□□□□ 0.98
LDB3O75112 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.2■□□□□ 0.98
LDB3O75112 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDB3O75112 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.2■□□□□ 0.98
LDB3O75112 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
LDB3O75112 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LDB3O75112 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDB3O75112 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDB3O75112 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDB3O75112 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.19■□□□□ 0.98
LDB3O75112 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.19■□□□□ 0.98
LDB3O75112 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
LDB3O75112 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.19■□□□□ 0.98
LDB3O75112 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.19■□□□□ 0.98
LDB3O75112 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDB3O75112 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LDB3O75112 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms