Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1BO60663 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1BO60663 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1BO60663 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
LMX1BO60663 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LMX1BO60663 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.83■□□□□ 0.77
LMX1BO60663 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LMX1BO60663 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LMX1BO60663 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.83■□□□□ 0.77
LMX1BO60663 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LMX1BO60663 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LMX1BO60663 UNC93B8-201ENST00000511903 705 ntBASIC19.83■□□□□ 0.77
LMX1BO60663 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.83■□□□□ 0.76
LMX1BO60663 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1BO60663 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1BO60663 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1BO60663 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1BO60663 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.82■□□□□ 0.76
LMX1BO60663 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.82■□□□□ 0.76
LMX1BO60663 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.82■□□□□ 0.76
LMX1BO60663 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1BO60663 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.82■□□□□ 0.76
LMX1BO60663 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.81■□□□□ 0.76
LMX1BO60663 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.81■□□□□ 0.76
LMX1BO60663 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.81■□□□□ 0.76
LMX1BO60663 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.81■□□□□ 0.76
LMX1BO60663 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LMX1BO60663 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LMX1BO60663 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.8■□□□□ 0.76
LMX1BO60663 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LMX1BO60663 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.8■□□□□ 0.76
LMX1BO60663 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
LMX1BO60663 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LMX1BO60663 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.8■□□□□ 0.76
LMX1BO60663 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.8■□□□□ 0.76
LMX1BO60663 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
LMX1BO60663 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
LMX1BO60663 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LMX1BO60663 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.8■□□□□ 0.76
LMX1BO60663 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LMX1BO60663 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
LMX1BO60663 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
LMX1BO60663 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LMX1BO60663 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LMX1BO60663 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.79■□□□□ 0.76
LMX1BO60663 TSPY9P-201ENST00000440215 945 ntBASIC19.79■□□□□ 0.76
LMX1BO60663 TSPY11P-201ENST00000442607 1045 ntBASIC19.79■□□□□ 0.76
LMX1BO60663 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.79■□□□□ 0.76
LMX1BO60663 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.79■□□□□ 0.76
LMX1BO60663 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.79■□□□□ 0.76
LMX1BO60663 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LMX1BO60663 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.79■□□□□ 0.76
LMX1BO60663 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LMX1BO60663 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LMX1BO60663 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1BO60663 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.78■□□□□ 0.76
LMX1BO60663 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.78■□□□□ 0.76
LMX1BO60663 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.78■□□□□ 0.76
LMX1BO60663 AC131274.2-201ENST00000580697 1507 ntBASIC19.78■□□□□ 0.76
LMX1BO60663 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.78■□□□□ 0.76
LMX1BO60663 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.78■□□□□ 0.76
LMX1BO60663 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1BO60663 AC137630.3-201ENST00000607245 391 ntBASIC19.78■□□□□ 0.76
LMX1BO60663 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
LMX1BO60663 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1BO60663 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1BO60663 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LMX1BO60663 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
LMX1BO60663 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
LMX1BO60663 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LMX1BO60663 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LMX1BO60663 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LMX1BO60663 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.77■□□□□ 0.76
LMX1BO60663 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LMX1BO60663 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
LMX1BO60663 AL022069.1-201ENST00000568025 1636 ntBASIC19.76■□□□□ 0.75
LMX1BO60663 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1BO60663 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1BO60663 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1BO60663 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1BO60663 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1BO60663 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1BO60663 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
LMX1BO60663 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.76■□□□□ 0.75
LMX1BO60663 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1BO60663 AL161729.1-201ENST00000604104 1402 ntBASIC19.76■□□□□ 0.75
LMX1BO60663 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1BO60663 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1BO60663 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1BO60663 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1BO60663 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1BO60663 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
LMX1BO60663 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1BO60663 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1BO60663 DUSP8P3-201ENST00000399571 1760 ntBASIC19.75■□□□□ 0.75
LMX1BO60663 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.75■□□□□ 0.75
LMX1BO60663 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
LMX1BO60663 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.75
LMX1BO60663 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1BO60663 AC092068.2-201ENST00000590491 1708 ntBASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms