Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC18.89■□□□□ 0.61
TRAV39A0A0B4J263 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRAV39A0A0B4J263 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRAV39A0A0B4J263 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
TRAV39A0A0B4J263 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAV39A0A0B4J263 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
TRAV39A0A0B4J263 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAV39A0A0B4J263 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAV39A0A0B4J263 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
TRAV39A0A0B4J263 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
TRAV39A0A0B4J263 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 AL031848.2-201ENST00000607670 837 ntBASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 GALC-202ENST00000393568 2054 ntTSL 2 BASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV39A0A0B4J263 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.85■□□□□ 0.61
TRAV39A0A0B4J263 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TRAV39A0A0B4J263 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TRAV39A0A0B4J263 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAV39A0A0B4J263 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAV39A0A0B4J263 AC012676.1-201ENST00000574705 1949 ntBASIC18.85■□□□□ 0.61
TRAV39A0A0B4J263 AC004448.1-201ENST00000458332 883 ntBASIC18.85■□□□□ 0.61
TRAV39A0A0B4J263 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.85■□□□□ 0.61
TRAV39A0A0B4J263 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
TRAV39A0A0B4J263 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAV39A0A0B4J263 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAV39A0A0B4J263 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV39A0A0B4J263 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRAV39A0A0B4J263 AC092068.2-201ENST00000590491 1708 ntBASIC18.83■□□□□ 0.61
TRAV39A0A0B4J263 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRAV39A0A0B4J263 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
TRAV39A0A0B4J263 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC18.83■□□□□ 0.61
TRAV39A0A0B4J263 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV39A0A0B4J263 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV39A0A0B4J263 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
TRAV39A0A0B4J263 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC18.83■□□□□ 0.6
TRAV39A0A0B4J263 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV39A0A0B4J263 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV39A0A0B4J263 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV39A0A0B4J263 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV39A0A0B4J263 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV39A0A0B4J263 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV39A0A0B4J263 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV39A0A0B4J263 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC18.83■□□□□ 0.6
TRAV39A0A0B4J263 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
TRAV39A0A0B4J263 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.82■□□□□ 0.6
TRAV39A0A0B4J263 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV39A0A0B4J263 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV39A0A0B4J263 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.81■□□□□ 0.6
TRAV39A0A0B4J263 DUSP8P3-201ENST00000399571 1760 ntBASIC18.81■□□□□ 0.6
TRAV39A0A0B4J263 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
TRAV39A0A0B4J263 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms