Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 NDUFS6P1-201ENST00000485187 316 ntBASIC14.35□□□□□ -0.11
LHX3Q9UBR4 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 AL133467.4-201ENST00000602953 725 ntBASIC14.35□□□□□ -0.11
LHX3Q9UBR4 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 TP53-221ENST00000615910 1149 ntTSL 5 BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 AC009560.1-201ENST00000620208 434 ntBASIC14.35□□□□□ -0.11
LHX3Q9UBR4 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 AL591122.2-201ENST00000624125 1853 ntBASIC14.35□□□□□ -0.11
LHX3Q9UBR4 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LHX3Q9UBR4 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 FTH1P22-201ENST00000456305 520 ntBASIC14.34□□□□□ -0.11
LHX3Q9UBR4 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 AL606495.2-201ENST00000605867 535 ntBASIC14.34□□□□□ -0.11
LHX3Q9UBR4 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 CMC2-224ENST00000630396 481 ntTSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 OR2I1P-210ENST00000642037 4691 ntBASIC14.34□□□□□ -0.11
LHX3Q9UBR4 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
LHX3Q9UBR4 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
LHX3Q9UBR4 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LHX3Q9UBR4 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
LHX3Q9UBR4 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms