Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 TSPY26P-202ENST00000565928 3884 ntBASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 GGTLC4P-201ENST00000402176 664 ntBASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 OR2W2P-201ENST00000406313 909 ntBASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 RN7SL173P-201ENST00000461853 292 ntBASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 HNRNPA3P6-201ENST00000472163 1006 ntBASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 MYL6-215ENST00000549566 685 ntTSL 2 BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 RN7SL605P-201ENST00000577229 281 ntBASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
ZC3H4Q9UPT8 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.14■□□□□ 0.34
ZC3H4Q9UPT8 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
ZC3H4Q9UPT8 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
ZC3H4Q9UPT8 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.14■□□□□ 0.34
ZC3H4Q9UPT8 AC106881.1-201ENST00000605849 3329 ntBASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 JPT2-203ENST00000382711 894 ntTSL 4 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 CASP2-203ENST00000392925 616 ntTSL 3 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 ALG1L15P-201ENST00000482834 794 ntBASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 AC091304.3-201ENST00000566500 716 ntBASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 ANKRD26P1-203ENST00000569528 966 ntBASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 AL591424.3-201ENST00000614278 872 ntBASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 AC048382.6-201ENST00000621980 1223 ntBASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ZC3H4Q9UPT8 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.13■□□□□ 0.33
ZC3H4Q9UPT8 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms