Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC16.4■□□□□ 0.22
ERCC4Q92889 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 TUBB8P4-201ENST00000511806 1324 ntBASIC16.4■□□□□ 0.22
ERCC4Q92889 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.4■□□□□ 0.22
ERCC4Q92889 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC16.4■□□□□ 0.22
ERCC4Q92889 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 AC015818.8-201ENST00000587907 1519 ntBASIC16.4■□□□□ 0.22
ERCC4Q92889 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
ERCC4Q92889 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.22
ERCC4Q92889 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC16.39■□□□□ 0.21
ERCC4Q92889 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
ERCC4Q92889 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC16.39■□□□□ 0.21
ERCC4Q92889 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
ERCC4Q92889 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.39■□□□□ 0.21
ERCC4Q92889 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC16.39■□□□□ 0.21
ERCC4Q92889 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.39■□□□□ 0.21
ERCC4Q92889 TERF1P3-201ENST00000505638 1227 ntBASIC16.39■□□□□ 0.21
ERCC4Q92889 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.39■□□□□ 0.21
ERCC4Q92889 RN7SL48P-201ENST00000579283 293 ntBASIC16.39■□□□□ 0.21
ERCC4Q92889 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.39■□□□□ 0.21
ERCC4Q92889 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
ERCC4Q92889 TCAF1P1-201ENST00000414990 2232 ntBASIC16.39■□□□□ 0.21
ERCC4Q92889 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
ERCC4Q92889 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC16.39■□□□□ 0.21
ERCC4Q92889 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 NUTM2HP-201ENST00000442076 2498 ntBASIC16.39■□□□□ 0.21
ERCC4Q92889 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
ERCC4Q92889 PCDHA6-201ENST00000378126 3267 ntBASIC16.39■□□□□ 0.21
ERCC4Q92889 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ERCC4Q92889 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
ERCC4Q92889 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
ERCC4Q92889 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 AC073548.1-201ENST00000624088 1882 ntBASIC16.38■□□□□ 0.21
ERCC4Q92889 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
ERCC4Q92889 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
ERCC4Q92889 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
ERCC4Q92889 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
ERCC4Q92889 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
ERCC4Q92889 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.38■□□□□ 0.21
ERCC4Q92889 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
ERCC4Q92889 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.38■□□□□ 0.21
ERCC4Q92889 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.38■□□□□ 0.21
ERCC4Q92889 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.38■□□□□ 0.21
ERCC4Q92889 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
ERCC4Q92889 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.38■□□□□ 0.21
ERCC4Q92889 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC16.38■□□□□ 0.21
ERCC4Q92889 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC16.38■□□□□ 0.21
ERCC4Q92889 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC16.38■□□□□ 0.21
ERCC4Q92889 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC16.38■□□□□ 0.21
ERCC4Q92889 AC068760.1-201ENST00000493579 1953 ntBASIC16.38■□□□□ 0.21
ERCC4Q92889 AC004241.5-201ENST00000623870 2448 ntBASIC16.38■□□□□ 0.21
ERCC4Q92889 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
ERCC4Q92889 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC16.38■□□□□ 0.21
ERCC4Q92889 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
ERCC4Q92889 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ERCC4Q92889 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 182.9 ms