Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 API5-208ENST00000531273 1868 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 TUBB8P4-201ENST00000511806 1324 ntBASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC60Q8IWA6 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.89■□□□□ 0.14
CCDC60Q8IWA6 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 AC098935.1-201ENST00000446057 611 ntBASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 RN7SL81P-201ENST00000493781 261 ntBASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 AC005740.1-201ENST00000515639 522 ntBASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 POLD4-208ENST00000532830 904 ntTSL 3 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 NDUFB10P1-201ENST00000567319 521 ntBASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 RPL17P45-201ENST00000586289 509 ntBASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 AC087045.2-201ENST00000606279 1003 ntBASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 USP39-220ENST00000613444 2161 ntTSL 2 BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC60Q8IWA6 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 MPRIPP1-201ENST00000452433 1089 ntBASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 AC130709.1-201ENST00000484779 1212 ntBASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 AC095040.1-201ENST00000513286 675 ntBASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 MT3-203ENST00000565838 421 ntTSL 3 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 RN7SL555P-201ENST00000584742 339 ntBASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
CCDC60Q8IWA6 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms