Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.34□□□□□ -0.27
RNF4P78317 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.34□□□□□ -0.27
RNF4P78317 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 JTB-202ENST00000356648 1040 ntTSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 AL662890.1-201ENST00000396818 632 ntBASIC13.34□□□□□ -0.27
RNF4P78317 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC13.34□□□□□ -0.27
RNF4P78317 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC13.34□□□□□ -0.27
RNF4P78317 AL133466.1-201ENST00000447582 150 ntBASIC13.34□□□□□ -0.27
RNF4P78317 TSACC-208ENST00000481479 741 ntTSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 POU5F1P2-201ENST00000521750 823 ntBASIC13.34□□□□□ -0.27
RNF4P78317 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
RNF4P78317 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
RNF4P78317 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC13.34□□□□□ -0.27
RNF4P78317 CU633904.3-201ENST00000624042 1029 ntBASIC13.34□□□□□ -0.27
RNF4P78317 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC13.34□□□□□ -0.27
RNF4P78317 HSPA8P5-201ENST00000456928 2069 ntBASIC13.34□□□□□ -0.27
RNF4P78317 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
RNF4P78317 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
RNF4P78317 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
RNF4P78317 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.34□□□□□ -0.27
RNF4P78317 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
RNF4P78317 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
RNF4P78317 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
RNF4P78317 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RNF4P78317 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RNF4P78317 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC13.33□□□□□ -0.27
RNF4P78317 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.33□□□□□ -0.27
RNF4P78317 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RNF4P78317 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
RNF4P78317 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RNF4P78317 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.33□□□□□ -0.28
RNF4P78317 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
RNF4P78317 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RNF4P78317 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RNF4P78317 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RNF4P78317 RNA5SP359-201ENST00000364838 113 ntBASIC13.33□□□□□ -0.28
RNF4P78317 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RNF4P78317 LBH-202ENST00000401506 485 ntTSL 3 BASIC13.33□□□□□ -0.28
RNF4P78317 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC13.33□□□□□ -0.28
RNF4P78317 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC13.33□□□□□ -0.28
RNF4P78317 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC13.33□□□□□ -0.28
RNF4P78317 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC13.33□□□□□ -0.28
RNF4P78317 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC13.33□□□□□ -0.28
RNF4P78317 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC13.33□□□□□ -0.28
RNF4P78317 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RNF4P78317 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC13.33□□□□□ -0.28
RNF4P78317 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC13.33□□□□□ -0.28
RNF4P78317 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC13.33□□□□□ -0.28
RNF4P78317 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
RNF4P78317 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RNF4P78317 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
RNF4P78317 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RNF4P78317 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC13.33□□□□□ -0.28
RNF4P78317 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC13.33□□□□□ -0.28
RNF4P78317 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
RNF4P78317 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
RNF4P78317 AC007191.1-201ENST00000623179 2995 ntBASIC13.33□□□□□ -0.28
RNF4P78317 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC13.33□□□□□ -0.28
RNF4P78317 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RNF4P78317 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
RNF4P78317 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RNF4P78317 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC13.33□□□□□ -0.28
RNF4P78317 FRMPD2B-201ENST00000431305 1347 ntBASIC13.33□□□□□ -0.28
RNF4P78317 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
RNF4P78317 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RNF4P78317 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.33□□□□□ -0.28
RNF4P78317 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms