Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14□□□□□ -0.17
TNFP01375 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14□□□□□ -0.17
TNFP01375 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TNFP01375 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
TNFP01375 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14□□□□□ -0.17
TNFP01375 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14□□□□□ -0.17
TNFP01375 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
TNFP01375 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
TNFP01375 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.99□□□□□ -0.17
TNFP01375 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 LINC00115-201ENST00000473798 1317 ntBASIC13.99□□□□□ -0.17
TNFP01375 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
TNFP01375 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 IGF1-203ENST00000392904 761 ntTSL 5 BASIC13.99□□□□□ -0.17
TNFP01375 HLA-DMA-203ENST00000395305 777 ntBASIC13.99□□□□□ -0.17
TNFP01375 RPSAP31-201ENST00000416648 895 ntBASIC13.99□□□□□ -0.17
TNFP01375 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC13.99□□□□□ -0.17
TNFP01375 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 RN7SL8P-201ENST00000461771 266 ntBASIC13.99□□□□□ -0.17
TNFP01375 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC13.99□□□□□ -0.17
TNFP01375 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC13.99□□□□□ -0.17
TNFP01375 MRPL22P1-201ENST00000505398 616 ntBASIC13.99□□□□□ -0.17
TNFP01375 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC13.99□□□□□ -0.17
TNFP01375 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC13.99□□□□□ -0.17
TNFP01375 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC13.99□□□□□ -0.17
TNFP01375 NPM1P43-201ENST00000558669 786 ntBASIC13.99□□□□□ -0.17
TNFP01375 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC13.99□□□□□ -0.17
TNFP01375 RN7SL665P-201ENST00000578793 300 ntBASIC13.99□□□□□ -0.17
TNFP01375 RN7SL555P-201ENST00000584742 339 ntBASIC13.99□□□□□ -0.17
TNFP01375 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC13.99□□□□□ -0.17
TNFP01375 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC13.99□□□□□ -0.17
TNFP01375 AL133467.4-201ENST00000602953 725 ntBASIC13.99□□□□□ -0.17
TNFP01375 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC13.99□□□□□ -0.17
TNFP01375 AL021707.6-201ENST00000609212 491 ntBASIC13.99□□□□□ -0.17
TNFP01375 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC13.99□□□□□ -0.17
TNFP01375 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
TNFP01375 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
TNFP01375 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 SBF1P1-201ENST00000444527 5631 ntBASIC13.99□□□□□ -0.17
TNFP01375 AL591122.2-201ENST00000624125 1853 ntBASIC13.99□□□□□ -0.17
TNFP01375 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
TNFP01375 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.99□□□□□ -0.17
TNFP01375 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TNFP01375 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TNFP01375 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
TNFP01375 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
TNFP01375 AC015656.1-201ENST00000624209 3578 ntBASIC13.98□□□□□ -0.17
TNFP01375 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
TNFP01375 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
TNFP01375 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TNFP01375 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.98□□□□□ -0.17
TNFP01375 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TNFP01375 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
TNFP01375 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
TNFP01375 API5-208ENST00000531273 1868 ntTSL 2 BASIC13.98□□□□□ -0.17
TNFP01375 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TNFP01375 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
TNFP01375 TNRC18P2-201ENST00000417666 2714 ntBASIC13.98□□□□□ -0.17
TNFP01375 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms