Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 CICP16-201ENST00000502609 2813 ntBASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 BEND3P1-201ENST00000421591 1944 ntBASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 NAP1L6-202ENST00000641404 1222 ntBASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 TCAM1P-207ENST00000485295 1537 ntBASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 TK2-221ENST00000620035 5060 ntTSL 2 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 AC024681.1-201ENST00000521917 487 ntBASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 CCNC-217ENST00000523985 958 ntTSL 2 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 CU633904.3-201ENST00000624042 1029 ntBASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 DDX5-235ENST00000630471 473 ntTSL 4 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 AC068587.10-201ENST00000641210 219 ntBASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 CNTNAP3P2-201ENST00000617175 3861 ntBASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 AL359881.3-201ENST00000602640 1721 ntBASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL4A3BPQ9Y5P4 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL4A3BPQ9Y5P4 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL4A3BPQ9Y5P4 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.1■□□□□ 0.17
COL4A3BPQ9Y5P4 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
COL4A3BPQ9Y5P4 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL4A3BPQ9Y5P4 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC16.1■□□□□ 0.17
COL4A3BPQ9Y5P4 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL4A3BPQ9Y5P4 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
COL4A3BPQ9Y5P4 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 235.6 ms