Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 RN7SL832P-201ENST00000607781 1756 ntBASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 KRT18P36-201ENST00000411618 1276 ntBASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 AC022494.1-201ENST00000466044 728 ntBASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 RCC2P8-201ENST00000502779 1035 ntBASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 DDX5-235ENST00000630471 473 ntTSL 4 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 AC090505.1-201ENST00000430515 1834 ntBASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 AC010327.5-201ENST00000586923 3061 ntBASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.35□□□□□ -0.11
TRIM39Q9HCM9 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 SDCCAG3P2-201ENST00000326105 1023 ntBASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 SLC16A6P1-201ENST00000413214 1059 ntBASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 REEP1-202ENST00000453231 940 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 HIST2H2BC-201ENST00000498492 580 ntBASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 PGAM1P5-201ENST00000548011 764 ntBASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 AC018629.1-201ENST00000623381 1736 ntBASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 AC064801.2-201ENST00000625052 1303 ntBASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms