Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 MIR326-201ENST00000362220 95 ntBASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 GPX4-206ENST00000588919 803 ntTSL 2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 AL391069.4-201ENST00000609583 481 ntBASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 MGST3-203ENST00000367885 680 ntTSL 2 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 APOA1-205ENST00000375329 927 ntTSL 2 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 DUX4L45-201ENST00000566406 1057 ntBASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
PDLIM3Q53GG5 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms